PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr3g0482191 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | B3 | ||||||||
Protein Properties | Length: 251aa MW: 28607.9 Da PI: 8.4797 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.1 | 1e-15 | 9 | 94 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ffkvl d ++++ l++p+ f+++++g +++ l+ + g+ W v+l + ++r+v+ +GW++F+k + L++gDf++F+ d+ s RcHm_v2.0_Chr3g0482191 9 FFKVL--VDGFSQQ-LRIPRAFVKNFNGRV--PRMCGLRGPCGNLWAVNL--KEIKDRVVFHNGWQSFAKHHFLEVGDFLTFTKDDGSI 90 78888..7777776.********8886663..45799*************..*******************************443344 PP E..EEE CS B3 90 felvvk 95 f v RcHm_v2.0_Chr3g0482191 91 F--DVI 94 4..554 PP | |||||||
2 | B3 | 44.4 | 3e-14 | 162 | 238 | 14 | 94 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 l++p k + + g+ ++kt++l+d++grsW++kl + ++++ + +GW + +k+n++ gD++v++++++s +l+v RcHm_v2.0_Chr3g0482191 162 YDLRIPSKVVIAAGLM--NNKTIMLQDPTGRSWSIKL--NETPRGQMRMEGWCNVCKENQISFGDTLVIEVVNHSVLQLHV 238 34999*9*99999877..5679***************..99999999999********************98878887776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence |
MELEERPSFF KVLVDGFSQQ LRIPRAFVKN FNGRVPRMCG LRGPCGNLWA VNLKEIKDRV 60 VFHNGWQSFA KHHFLEVGDF LTFTKDDGSI FDVIIYDKSY CEKNVEAAKS RIGNVVDRTI 120 NNHIILGKRP ALDLVEETSI GSISFNSENP FFTTIFTRYT RYDLRIPSKV VIAAGLMNNK 180 TIMLQDPTGR SWSIKLNETP RGQMRMEGWC NVCKENQISF GDTLVIEVVN HSVLQLHVYK 240 VGAALDVETQ S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 8e-16 | B3 family protein |