PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0480621
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 343aa    MW: 38173.4 Da    PI: 8.6341
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0480621genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.7e-13271316655
                             HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  RcHm_v2.0_Chr3g0480621 271 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKELQ 316
                             689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MYNSAPPIKS WQTELPLMDS NTHLNLEHQQ PHHQPNSGLL RFRSAPSSVF AENNNNADLG  60
VHKGTLIEGG SDSDRLFSRF VSYSHSNDSE SWPSSFQEFE DKSTVTEAAV TASRMSSQHQ  120
QQGFPGLPPH YPRQNSFGSG NGSYGLVGSA AVEHHPQAKT VTSNLVRQSS SPAGLFSNNT  180
SVQNGFPFGA WNDPSNFADN LSGMRRDQDN DQKLFSATQN GDLGNRIHIL SHHLSLPKNS  240
AEVAMEKFLQ LQDSVPCKVR AKRGCATHPR SIAERVRRTR ISERMRKLQE LVPNMDKQTN  300
TADMLDLAVD YIKELQKQFK SLSDVRANCK CLSMQKPVQN QIV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-106bHLH family protein