PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr3g0480601 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 213aa MW: 24326 Da PI: 7.902 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.5 | 2.6e-16 | 19 | 53 | 15 | 49 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyey 49 +Rr+gi+KKA ELSvLC+a va+i+fs gk++ y RcHm_v2.0_Chr3g0480601 19 RRRAGIFKKAGELSVLCGAHVAIIVFSGAGKVFCY 53 69*****************************9877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence |
MYQSPQRSIN TLLLKRRRRR RAGIFKKAGE LSVLCGAHVA IIVFSGAGKV FCYGHPNINT 60 VLESYQNGLS SVVRVNEEAG DLLVAEFNKE YVEAEKEFED LKRKATGIKQ MADEKKKMMK 120 EMNMSEGFWW DEAVDLAMMD EREWEQYFKA LEELRRKVAA RVDELKILNG TMMGPPVPAV 180 HHRLCHVPFM TSNNCFGNCQ DVQFGSGYHD LGV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 15 | 20 | KRRRRR |
2 | 15 | 21 | KRRRRRR |
3 | 16 | 21 | RRRRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-17 | M-type_MADS family protein |