PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0479361

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HD-ZIP

Protein Properties

Length: 345aa MW: 38490.2 Da PI: 8.3729

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0479361	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.7e-18	173	227	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k RcHm_v2.0_Chr3g0479361 173 RKKLRLSKDQSAFLEESFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTK 227 678899***********************************************98 PP
2	HD-ZIP_I/II	127.7	5.1e-41	173	263	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eL RcHm_v2.0_Chr3g0479361 173 RKKLRLSKDQSAFLEESFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQEL 259 69************************************************************************************* PP HD-ZIP_I/II 88 reelk 92 r +lk RcHm_v2.0_Chr3g0479361 260 R-ALK 263 9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MELALSLGDA PKQFLFLDKT PSMGSNKDLG FCMALGSRES REGYDQEDES SRRRRRVSSD 60 PPIQLNLLPS APVMKTSSQL RFPWLTDNLA VSEPAGLDEP GKGLDVNRFP LVAGTADEAE 120 DAAAQLSSPN STVSSFQMDF GVRRSKRDLD LEVLETERAS SRASDDDENG STRKKLRLSK 180 DQSAFLEESF KEHSTLNPKQ KIALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR 240 CCETLTEENR RLQKELQELR ALKTSQPFYM QLPATTLTMC PSCERVVTTA SPNTTTTNPT 300 TNTTIKSSSP SSGLTNNHSR LHSHVPFAQA QAHMQPQVQA NKGAA

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MELALSLGDA PKQFLFLDKT PSMGSNKDLG FCMALGSRES REGYDQEDES SRRRRRVSSD  60
PPIQLNLLPS APVMKTSSQL RFPWLTDNLA VSEPAGLDEP GKGLDVNRFP LVAGTADEAE  120
DAAAQLSSPN STVSSFQMDF GVRRSKRDLD LEVLETERAS SRASDDDENG STRKKLRLSK  180
DQSAFLEESF KEHSTLNPKQ KIALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR  240
CCETLTEENR RLQKELQELR ALKTSQPFYM QLPATTLTMC PSCERVVTTA SPNTTTTNPT  300
TNTTIKSSSP SSGLTNNHSR LHSHVPFAQA QAHMQPQVQA NKGAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	172	178	TRKKLRL
2	222	230	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-103	HD-ZIP family protein