PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr3g0477441 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 194aa MW: 22299.2 Da PI: 8.6792 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.4 | 7.6e-18 | 15 | 61 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+i n r+vtfskRr g+ KK +EL +LC+aev v++fs++ k + RcHm_v2.0_Chr3g0477441 15 KKIANADDRHVTFSKRRSGVYKKCNELATLCGAEVGVVVFSESEKPF 61 6899**************************************98855 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence |
MEGRKTRGRQ KIEIKKIANA DDRHVTFSKR RSGVYKKCNE LATLCGAEVG VVVFSESEKP 60 FSYGNPSIDS IADRFLNLQP PQENSDDRIA GSLVGAYKHA RYMEILNKHN ELEDKLRDEQ 120 LREKVLLQKE RARASAEQEG LGWWQRPIKE LDSEELKQMY ASFQHLHNSL SNHLVLLNVA 180 THNVNNNNNI INMQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 5e-35 | M-type_MADS family protein |