PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0474101

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MIKC_MADS

Protein Properties

Length: 204aa MW: 23585 Da PI: 8.4737

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0474101	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	56.7	3.1e-18	10	46	15	51
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +R+++++KKA+ LSvLCdaeva+i f s+gkl+e+ss RcHm_v2.0_Chr3g0474101 10 RRQATLFKKAHQLSVLCDAEVAIIAFTSDGKLHEFSS 46 79*********************************96 PP
2	K-box	29.9	2.3e-11	88	162	22	95
K-box 22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee.lqkkekelqeenkaLr 95 Lk + L e+ +++G++L++Ls +eL Le+q +l ++ +kK+ell+e++++ + e+++ +e+++L RcHm_v2.0_Chr3g0474101 88 HELKGKHAALSLEISRRMGKELDDLSREELCALEEQQLWALLSVNDKKKELLVEMLQRsMSGDEQRAVQEKENLI 162 679999999*********************************************997625556777777777775 PP

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence
MPTTENIGIR RQATLFKKAH QLSVLCDAEV AIIAFTSDGK LHEFSSTSME HTLSRYKGEV 60 EQSRPEEGRR HEPAKLEKPK PCDNYIIHEL KGKHAALSLE ISRRMGKELD DLSREELCAL 120 EEQQLWALLS VNDKKKELLV EMLQRSMSGD EQRAVQEKEN LIRGFEGRIR ERPYVLQDHG 180 LNRMVYSTKL KAVSLYNRPS QIQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57390.1	7e-22	MIKC_MADS family protein