PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0472361
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 200aa    MW: 22209.4 Da    PI: 6.5357
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0472361genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.2e-1658109156
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                             + ykGVr++  +g+Wv+e r p   g k+ r++lg+f  +e+Aa+a++ a+++l+ge
  RcHm_v2.0_Chr3g0472361  58 PVYKGVRQR--NGKWVCEMRQP---GlKKSRVWLGTFTCPEMAARAYDVAALALKGE 109
                             68****975..6******9999...9999*************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MLCDASASSL MAYREEPAAP SSPASLLMNL GQTLTHIQSG VIKKRKAGRK KFKETRHPVY  60
KGVRQRNGKW VCEMRQPGLK KSRVWLGTFT CPEMAARAYD VAALALKGES AQLNFPDEAK  120
ASPSWTSSMS LPELTSMVNL EKVEVGSSKG YVDEEELFNM PEILDSMAEG LILTPPALKK  180
GFNWDDYDLE NAVEFSLWSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.13e-30ERF family protein