PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0472271

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 589aa MW: 66851.9 Da PI: 6.7908

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0472271	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.9	1.6e-29	137	222	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qle RcHm_v2.0_Chr3g0472271 137 RWPRQETLTLLEIRSRLDYKFKEANQKGPLWDEVSRIMcEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLE 221 8*********************************998***************************98..55667*****8 PP trihelix 87 a 87 a RcHm_v2.0_Chr3g0472271 222 A 222 5 PP
2	trihelix	54	4.5e-17	428	502	2	72
trihelix 2 WtkqevlaLiearremeerlrr....gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 W++ e+ +Li++r +me+r+++ g+ ++ lWee+++km+ g+ers Ckekwe++n k ke +k++ RcHm_v2.0_Chr3g0472271 428 WPECEINKLIQLRGSMESRFSTsqrgGCVEERLWEEIAAKMSCLGYERSGMVCKEKWESINYVRKCSKELFSKKR 502 *******************9444447*****************************9855444444333332 PP

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence
MEMEDQYGLG DLRQLMNGTG RSHFPAIQTP TELFPSSHHH RPQLLAPAHH HHHHHHQHQQ 60 QQQHPYEIMM MGRLQTSHDI IPRGIHEFRS ADSAGGCGGG GGACTNNTVA ATSSLSGGGG 120 LEAEGGGCLG GDGGSGRWPR QETLTLLEIR SRLDYKFKEA NQKGPLWDEV SRIMCEEHGY 180 QRSGKKCREK FENLYKYYKK TKEGKAGRQD GKHYRFFRQL EALYGETSNN IAVSSLPPDQ 240 SHFVGNNNIN NNNNTFRYQA QPSHQDTTTA TTYQSTQSVS NSSDFEDSSS SEDNDGSAIA 300 PMDDEVLEMK RTRKRRGWKV KIKEFIDVQM RKMMEKQEEW LEKLMGTLEQ KERERVLREE 360 EWRKQEAGRV EREQQFWAKE RAWIEARDKA LMDALQKLTG SSTSHEVKTS SSTPDHDHED 420 IVSEQETWPE CEINKLIQLR GSMESRFSTS QRGGCVEERL WEEIAAKMSC LGYERSGMVC 480 KEKWESINYV RKCSKELFSK KRKENNSRSS SCYFGNNESN SSLYSSQGGV YATCEMNNHE 540 QGNGGSPSNN PNVGNAAVVN DTCFPFLMGE GDNLWENYGL KLSKGSQNQ

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence

MEMEDQYGLG DLRQLMNGTG RSHFPAIQTP TELFPSSHHH RPQLLAPAHH HHHHHHQHQQ  60
QQQHPYEIMM MGRLQTSHDI IPRGIHEFRS ADSAGGCGGG GGACTNNTVA ATSSLSGGGG  120
LEAEGGGCLG GDGGSGRWPR QETLTLLEIR SRLDYKFKEA NQKGPLWDEV SRIMCEEHGY  180
QRSGKKCREK FENLYKYYKK TKEGKAGRQD GKHYRFFRQL EALYGETSNN IAVSSLPPDQ  240
SHFVGNNNIN NNNNTFRYQA QPSHQDTTTA TTYQSTQSVS NSSDFEDSSS SEDNDGSAIA  300
PMDDEVLEMK RTRKRRGWKV KIKEFIDVQM RKMMEKQEEW LEKLMGTLEQ KERERVLREE  360
EWRKQEAGRV EREQQFWAKE RAWIEARDKA LMDALQKLTG SSTSHEVKTS SSTPDHDHED  420
IVSEQETWPE CEINKLIQLR GSMESRFSTS QRGGCVEERL WEEIAAKMSC LGYERSGMVC  480
KEKWESINYV RKCSKELFSK KRKENNSRSS SCYFGNNESN SSLYSSQGGV YATCEMNNHE  540
QGNGGSPSNN PNVGNAAVVN DTCFPFLMGE GDNLWENYGL KLSKGSQNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-105	Trihelix family protein