PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0471691

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HD-ZIP

Protein Properties

Length: 238aa MW: 27648 Da PI: 8.4098

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0471691	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	7e-19	78	131	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++++qle Le+ F+++ +++ +++ +L++ lgL+ rq+ vWFqNrRa++k RcHm_v2.0_Chr3g0471691 78 KKKRLSTDQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWK 131 56679************************************************9 PP
2	HD-ZIP_I/II	119.6	1.7e-38	77	168	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 ekk+rls++q+++LE+sF+ee kL+p+rK++l+r+Lglqprq+avWFqnrRAR+k+kqlE+ y+aLk+ yda+++e+++L++ev +L RcHm_v2.0_Chr3g0471691 77 EKKKRLSTDQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWKAKQLERLYDALKQDYDAVSKEKQKLQDEVMKL 163 69************************************************************************************* PP HD-ZIP_I/II 88 reelk 92 ++ l+ RcHm_v2.0_Chr3g0471691 164 KTILR 168 97665 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MDWTNTNLRQ QQHHHLVSRP ESSFGFLYNY NFDPFPHPGM EMKHHQAMFS ETPQGSVPSS 60 MERNSHHVMS YGCNSQEKKK RLSTDQLESL ERSFQEEIKL DPDRKMKLSR DLGLQPRQIA 120 VWFQNRRARW KAKQLERLYD ALKQDYDAVS KEKQKLQDEV MKLKTILREE VARKQVSPGY 180 TEISGEETVE STSVAAIRSS NKAGGVSQHQ IAEGNYLFNV EEYNPVSPPY WGALPSYP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	107	KKKRLSTDQLESLERSFQEEIKLDPDRKMK
2	126	134	RRARWKAKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	6e-61	HD-ZIP family protein