PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr3g0470021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | TCP | ||||||||
Protein Properties | Length: 249aa MW: 26700.6 Da PI: 7.7366 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116 | 4.8e-36 | 69 | 188 | 4 | 105 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg 88 + ++++hTkv+gR+RRvR++a caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tgt++ +a+ c +++ s s+ s + RcHm_v2.0_Chr3g0470021 69 RSANTKDRHTKVNGRGRRVRMPAMCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGTGTHPAQLCtsTPAISASMP---SLH 152 67789*********************************************************9999977743222222222...222 PP TCP 89 ..................kaaksaa.kskksqksaa 105 + ++++ +++++q++ + RcHm_v2.0_Chr3g0470021 153 crptistvnttgaagqlvYHLQQHPvSQSHQQQQLS 188 334455555555566666444444445555555554 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence |
MGSEMALQDY LSPDPPHHHH HQLPTLKRED PTQNVAVPAA VLTSTTTVTT VTTAEDSART 60 TQQLSRTRRS ANTKDRHTKV NGRGRRVRMP AMCAARIFQL TRELGHRSDG ETIEWLLRHA 120 EPSIIAATGT GTHPAQLCTS TPAISASMPS LHCRPTISTV NTTGAAGQLV YHLQQHPVSQ 180 SHQQQQLSCR LDLCQPLPGL DYSAVAGNNN GGYQNSHGYN HHGFTALLLQ SGVGDGGDAA 240 SGEGSQGLD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 7e-36 | TCP family protein |