PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0469661
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 703aa    MW: 77251.3 Da    PI: 6.9481
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0469661genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23121222199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++
  RcHm_v2.0_Chr3g0469661 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSI 205
                             89****************************996555555..89******************************************** PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             vF   + +++ l+v+++r+
  RcHm_v2.0_Chr3g0469661 206 VFL--RAENGDLCVGIRRA 222
                             ***..4488999****997 PP
2Auxin_resp115.73.9e-38290373183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                             aa+ as++++FevvY+Prast+eF+vk++ v++al++++++GmRfkmafetedss++++ +Gt+++v+ ++p+rWp+S+Wr+L+
  RcHm_v2.0_Chr3g0469661 290 AATLASNGQPFEVVYYPRASTPEFCVKASLVKAALQIRWCPGMRFKMAFETEDSSRISWfMGTISSVHVSEPMRWPESPWRLLQ 373
                             6899******************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    
MITFMDSKEK LKEGEKCLDP QLWHACAGGM VQMPSVNAKV FYFPQGHAEH ACGPVDFRNC  60
PRIPPYILCR VSAIKFMADP ETDEVYAKIR LVPLSSSEAG YEDNGIGGIN GADSQDKPAS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT  180
PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCVGIR RAKRGIGGGP ESSSGWNPAG  240
GNCAMPYGGF SSYLREDEGK LMRNGNGNGS NSNGSLMGKG KVGPESVLEA ATLASNGQPF  300
EVVYYPRAST PEFCVKASLV KAALQIRWCP GMRFKMAFET EDSSRISWFM GTISSVHVSE  360
PMRWPESPWR LLQVSWDEPD LLQNVKRVSP WLVELVSNMP AIHLTPFSPP RKKMRLPQHP  420
DFPFEGQLPM PTFSGNHHLL GTSSPFGCLP DKTPAGMQGA RHAHYGLSLS DIHLNKLQSG  480
LFPAGFPPLD HVATPTKFSN NTMIQRPTMS ENVSCLLTMA HSPQSSKKPD DVKPPQLMLF  540
GQTILTEQQI SMSSSGDTVS PVLTGNSSSD GSGDKMANHS DNSGSALHQQ SVQERSSGEG  600
FHWYKDTRHE AEPNLETGHC KVFMESEDVG RTLDFSQFKS YDELYTKLAD MFGIENSETL  660
NHVLYRDATG AVKHIGDEPF SDFVKTARRL TILMDSGSNN VGM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0ARF family protein