PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0467541

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 171aa MW: 18976.3 Da PI: 10.1956

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0467541	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00061	40	62	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H +H RcHm_v2.0_Chr3g0467541 40 YECKTCNRQFSSFQALGGHRASH 62 99**********99999998887 PP
2	zf-C2H2	14.5	0.0001	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs L H+r+H RcHm_v2.0_Chr3g0467541 89 HECSICGMEFSLGQALGGHMRRH 111 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence
MKTMKNQEVM GLDMAKCLML LSCRLETKFK KCSSSPNDVY ECKTCNRQFS SFQALGGHRA 60 SHKKPRTLPG SDQDSKSETK LAQSKPKKHE CSICGMEFSL GQALGGHMRR HRMMNAGFSS 120 SVPSAAVVAS KIPVLMRSNS KRVMCLELDL NLTPLENDLK VLFGNMAPKV F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	1e-37	C2H2 family protein