PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0466391
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 767aa    MW: 86193 Da    PI: 6.5687
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0466391genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.82.2e-1143947651374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l++lL+++A+av+++d++ a++lL++++ ++sp gd +qRla++f+ +L+arla+++s++yk + +++t+    +++l+a++lf  +
  RcHm_v2.0_Chr3g0466391 394 LRSLLITVAQAVAADDHRTANELLKKVRLHSSPFGDGTQRLAHCFADGLEARLAGTGSQIYKGFVSKRTP---AADVLKAYHLFLAA 477
                             689**************************************************************99999...9************* PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                             +P+ k+s+++ N++I+ + +++ r+H+i f+i +G+QWp+L+q +a R++gpp+lRiTg++ p++g   +e +eetg+rLa +Ae++
  RcHm_v2.0_Chr3g0466391 478 CPFTKLSNFVSNKTIMTSSQKAMRLHVIVFGIHYGFQWPTLIQRIAMREGGPPKLRITGIEFPQPGfrPAEGVEETGRRLAAYAETF 564
                             *****************************************************************9********************* PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +vpfe+n+ +ak++e+++leeL++ ++E l+Vn+ ++ ++lldesv+++s+r++vL+l+++++P+++++   +  +n++ F++rf e
  RcHm_v2.0_Chr3g0466391 565 HVPFEYNA-IAKKWENITLEELKIGRDEFLVVNCLYRGKNLLDESVAVDSARNRVLNLIRRTNPDIFIHGVINGAYNAPFFVTRFRE 650
                             ********.7***************************************************************************** PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             al ++s++fd+le+ +pre++er+++E+e++gre+ nv+aceg er+er e++++W+ r  +aGF ++p++ + +k a + ++  + 
  RcHm_v2.0_Chr3g0466391 651 ALFHFSSMFDMLETVVPREDRERMVIEKEIIGREALNVIACEGWERVERPESYKQWQVRNLRAGFVQIPFDRELVKLAARKVKSSYH 737
                             ************************************************************************************998 PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                             + + ++e+  +l++gWk+r+++++SaW+
  RcHm_v2.0_Chr3g0466391 738 KDFVIDEDGRWLLQGWKGRTIFAISAWK 765
                             88*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    
MTMDPRLRSF SDSLNGVRLS NRPFSILSHQ NIVPQSPFSS HPFLGSDYRE FNYPRPDLTP  60
NDLSSVSSLS HEEEDCDFSD EVLKYINQML MEEDMEDKTC MLQESLELQA AEKSFYDVLG  120
KKYPPSPEVN HDFSVPYGEI PDDGFSGNSS NYITSSSSNS GFSGNGSSYI TSSSNSGSYF  180
SDGTWIQSPG GYMSQFQGLP PYNISHSSYG SSTMVSSLDG LVESPSSSLH VPDFSTETRS  240
VWQFNKGVEE ASRFLPGETN LVVDLDVNWL SAQALKVRTD EEVVKPEKKD EGECSSCGPR  300
GRKNPYREDD EDVEENRSSK QAAVSTESTL RSEMFDKILL CSLGEGKEHL ISKREQLQNG  360
MIKSVPQKEK SKGSNGGKGR GKKQSGNKKD VVDLRSLLIT VAQAVAADDH RTANELLKKV  420
RLHSSPFGDG TQRLAHCFAD GLEARLAGTG SQIYKGFVSK RTPAADVLKA YHLFLAACPF  480
TKLSNFVSNK TIMTSSQKAM RLHVIVFGIH YGFQWPTLIQ RIAMREGGPP KLRITGIEFP  540
QPGFRPAEGV EETGRRLAAY AETFHVPFEY NAIAKKWENI TLEELKIGRD EFLVVNCLYR  600
GKNLLDESVA VDSARNRVLN LIRRTNPDIF IHGVINGAYN APFFVTRFRE ALFHFSSMFD  660
MLETVVPRED RERMVIEKEI IGREALNVIA CEGWERVERP ESYKQWQVRN LRAGFVQIPF  720
DRELVKLAAR KVKSSYHKDF VIDEDGRWLL QGWKGRTIFA ISAWKPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein