PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0466341
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WRKY
Protein Properties Length: 292aa    MW: 32952.7 Da    PI: 4.9906
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0466341genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.71e-32114170258
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                             dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers+edp++++itYeg H h
  RcHm_v2.0_Chr3g0466341 114 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSSEDPDTLIITYEGLHLH 170
                             8******************************************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MEEAMSTNWP DGLEEELVRE LLDNESPFFV LPEEAVEYPQ MSFSNKEGLN RFVQNVYSGP  60
TIHDIETALS VTTGITVQPQ ELSQARLSIL ERGLSKVEHK YTLKIKSCDS GMADDGYKWR  120
KYGQKSIKNS PNPRSYYRCT NPRCSAKKQV ERSSEDPDTL IITYEGLHLH FAYPFFHLTP  180
AQNPNPPTKK PKKRTLAAQP EDHEQDAQES PRSVTPDPEH DLQPGAFTDQ PQEFVEEERG  240
SQGLLEDVVP FMIRKPSSAS NSSCCSYRSP PTSPPSLSWP SYFDVGINHS IG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.18e-53WRKY family protein