PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0464821

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TALE

Protein Properties

Length: 608aa MW: 67470 Da PI: 6.9201

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0464821	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.6	1.2e-09	395	432	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gL+ +qV++WF N R + RcHm_v2.0_Chr3g0464821 395 FEHflHPYPTDTDKIMLAKQTGLSRSQVSNWFINARVR 432 554459******************************88 PP
2	BELL	107.9	6.2e-35	257	326	3	72
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e ++kk++L+s+l+eV++rYkqy++q+ +v++sFe vaglg+a+pY++lA ka+SrhF cLk+ai++q+ RcHm_v2.0_Chr3g0464821 257 SESRRKKSRLISMLDEVYRRYKQYYHQMTAVVNSFEYVAGLGNAAPYANLAIKAMSRHFTCLKNAITDQL 326 6889***************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence
MAEGFEPYHV PQQSRRDKLR FLPGQPHPVC EEPGPHHLHG CAAAAFYDPT SISLISSSDL 60 LTCAGSSVKG EGHVNLMGYM NTSTASSSLN NFRHPYLDPQ PSNFAPNPNS VHDINGLNNM 120 FLYPSQQNHH HLRDFHDEAA VLFKPEPLSL SLSSQPVEVH NLQRYGYSGI NDGGHGSRSP 180 GPTPLGPFTG YASILKGSRF LKPAQQLLEE FCDVGSSSRE IYAAVSRIMT DESSSFLDDP 240 PIESLDDPVS VGGGDGSESR RKKSRLISML DEVYRRYKQY YHQMTAVVNS FEYVAGLGNA 300 APYANLAIKA MSRHFTCLKN AITDQLQYSR SSRDATTFVS RDKDEAIPML RNTTRGMYTQ 360 HRSFQSTEFG EHQPVWRPQR GLPERAVTVL RSWLFEHFLH PYPTDTDKIM LAKQTGLSRS 420 QVSNWFINAR VRLWKPMVEE IHMLETRQAH IASQKSGDQN ADRSDDHDHL PSANSVASEN 480 PSTSTYRAQD TASKRPRNEF PDVTVARTHE ELNMSYNNLP SHLHHVGHVG ASMAGGSTNG 540 VSLTLGLHHQ NNGIGMAEPP YAIINTAQRF GLGLEGNSDG YTMGGFDAQN RHFGRDVMGG 600 QLLHDFVG

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence

MAEGFEPYHV PQQSRRDKLR FLPGQPHPVC EEPGPHHLHG CAAAAFYDPT SISLISSSDL  60
LTCAGSSVKG EGHVNLMGYM NTSTASSSLN NFRHPYLDPQ PSNFAPNPNS VHDINGLNNM  120
FLYPSQQNHH HLRDFHDEAA VLFKPEPLSL SLSSQPVEVH NLQRYGYSGI NDGGHGSRSP  180
GPTPLGPFTG YASILKGSRF LKPAQQLLEE FCDVGSSSRE IYAAVSRIMT DESSSFLDDP  240
PIESLDDPVS VGGGDGSESR RKKSRLISML DEVYRRYKQY YHQMTAVVNS FEYVAGLGNA  300
APYANLAIKA MSRHFTCLKN AITDQLQYSR SSRDATTFVS RDKDEAIPML RNTTRGMYTQ  360
HRSFQSTEFG EHQPVWRPQR GLPERAVTVL RSWLFEHFLH PYPTDTDKIM LAKQTGLSRS  420
QVSNWFINAR VRLWKPMVEE IHMLETRQAH IASQKSGDQN ADRSDDHDHL PSANSVASEN  480
PSTSTYRAQD TASKRPRNEF PDVTVARTHE ELNMSYNNLP SHLHHVGHVG ASMAGGSTNG  540
VSLTLGLHHQ NNGIGMAEPP YAIINTAQRF GLGLEGNSDG YTMGGFDAQN RHFGRDVMGG  600
QLLHDFVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02030.1	1e-109	TALE family protein