PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0464251

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 388aa MW: 42422.3 Da PI: 5.8164

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0464251	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.5	2.7e-17	43	88	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEd+ l ++v ++G ++W++Iar + gR++k+c++rw + RcHm_v2.0_Chr3g0464251 43 RGPWSPEEDKVLSRLVSKFGARNWSLIARGIS-GRSGKSCRLRWCNQ 88 89****************************.*********985 PP
2	Myb_DNA-binding	58.1	2e-18	95	139	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++++eEd+ ++ a++ +G++ W++Iar ++ gRt++ +k++w++ RcHm_v2.0_Chr3g0464251 95 RKPFSEEEDQMIIAAHTIHGNK-WAAIARLLP-GRTDNAIKNHWNST 139 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MEPELAEDSV AVIEVDASED DAGSGKDEAA KGGKGKKGKS KVRGPWSPEE DKVLSRLVSK 60 FGARNWSLIA RGISGRSGKS CRLRWCNQLD PILKRKPFSE EEDQMIIAAH TIHGNKWAAI 120 ARLLPGRTDN AIKNHWNSTL RRRDPDRMKS ESGNMVEDVS LDKTIASSEE TLSNGDVNSS 180 KSTEGKEVSS LEYTDDQHED KVSTDGLYGN EAREPCTLFR PVARVSAFSV YNHLGGQDPS 240 SSLQRPIPVQ GPLVQVAKLD VGICKLVEGI YGEWSVPDQC GHGCCCTQNG RNTENSLLGP 300 DFVEFSEPPC FPSFELAAIA TDISNLAWLK SGLENSSARV TGDAAGSIPS HASQGQLGHF 360 EESRMNHLFH HEERKDRLMS MKTNVLST

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MEPELAEDSV AVIEVDASED DAGSGKDEAA KGGKGKKGKS KVRGPWSPEE DKVLSRLVSK  60
FGARNWSLIA RGISGRSGKS CRLRWCNQLD PILKRKPFSE EEDQMIIAAH TIHGNKWAAI  120
ARLLPGRTDN AIKNHWNSTL RRRDPDRMKS ESGNMVEDVS LDKTIASSEE TLSNGDVNSS  180
KSTEGKEVSS LEYTDDQHED KVSTDGLYGN EAREPCTLFR PVARVSAFSV YNHLGGQDPS  240
SSLQRPIPVQ GPLVQVAKLD VGICKLVEGI YGEWSVPDQC GHGCCCTQNG RNTENSLLGP  300
DFVEFSEPPC FPSFELAAIA TDISNLAWLK SGLENSSARV TGDAAGSIPS HASQGQLGHF  360
EESRMNHLFH HEERKDRLMS MKTNVLST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-108	MYB family protein