PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0462911
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Trihelix
Protein Properties Length: 312aa    MW: 36706.2 Da    PI: 6.0822
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0462911genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.83.9e-2561142185
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                             +W+ qe+++Li++r  +++++ ++k++k+lWe ++ +m+++g +rs++qCk+kw+nl +ryk +++ e +     ++++p+f++l
  RcHm_v2.0_Chr3g0462911  61 QWSVQETKELITIRAGLDQTFMETKRNKQLWEVIATQMKDKGHNRSAEQCKCKWKNLVTRYKGCETAEAET---MRQQFPFFNDL 142
                             7********************************************************************84...55679****98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MEGHYPHHLH QQQQQELHQF QLQHQFQVVQ QPQQLLPPPP QQHLSPPPIT VHVDASDRFP  60
QWSVQETKEL ITIRAGLDQT FMETKRNKQL WEVIATQMKD KGHNRSAEQC KCKWKNLVTR  120
YKGCETAEAE TMRQQFPFFN DLATIMAARE QRMVWTEADS IGGASASKKK AAAVTLSSDE  180
EDEDNEDSEE AGEKGITAAR KKKKVMKTGN IGSSTGMGLG GNNVKEILED FMRQQLQLDM  240
QWREEFQARE NERRMREYEW RQTMEALENE RLMLEREWRE REEQRRMREE ARAEKRDAIL  300
TALLDRLNRE DM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.14e-55Trihelix family protein