PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0461481

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 506aa MW: 55933.1 Da PI: 7.9918

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0461481	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.3	6.4e-33	209	265	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d+++++i+Y+g+Hnh RcHm_v2.0_Chr3g0461481 209 DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITQIVYKGSHNHA 265 8**************************************.*************7 PP
2	WRKY	106.5	1.4e-33	376	434	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++d+++v++tYeg+Hnh+ RcHm_v2.0_Chr3g0461481 376 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCPVRKHVERASHDTRAVITTYEGKHNHD 434 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence
MTSSFTHLLT SNMNMNNFDQ DRTGSWSWGL SDRSTEAEIP KFKSLQPPSL PLSPPPASPS 60 SYLVNNPGFS PTDFFSSPMF LTHSNTLPSP TTGAFSSQIF DWMSTPKENN SQHGAEKEQK 120 MFADFSFQPA TSSSSFSVQQ SSSSMVSSVE ESLKSQQQQS WGFNNPRQEE SVAEKTEVKS 180 EFAPTQSFNA APKSDYTHST QYVREQKSDD GYNWRKYGQK QVKGSENPRS YYKCTFPSCP 240 TKKKVERSLD GQITQIVYKG SHNHAKPQST RRSASQQQSL QTSSYGISDQ SASTISNPKI 300 EAVTLQEDSN SASMGGEDEF EQNSPISNSN GADDDNEPEA KRWKGENANE TYAAPGSRIV 360 KEPRIVVQTT SEIDILDDGY RWRKYGQKVV KGNPNPRSYY KCTSTGCPVR KHVERASHDT 420 RAVITTYEGK HNHDVPAARG SGGYGTRPAS DANSNSNVSV AAVRPLALPN HSNNLSYLSS 480 LQKQPTSESQ APYTLKMLQN TGSYGY

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence

MTSSFTHLLT SNMNMNNFDQ DRTGSWSWGL SDRSTEAEIP KFKSLQPPSL PLSPPPASPS  60
SYLVNNPGFS PTDFFSSPMF LTHSNTLPSP TTGAFSSQIF DWMSTPKENN SQHGAEKEQK  120
MFADFSFQPA TSSSSFSVQQ SSSSMVSSVE ESLKSQQQQS WGFNNPRQEE SVAEKTEVKS  180
EFAPTQSFNA APKSDYTHST QYVREQKSDD GYNWRKYGQK QVKGSENPRS YYKCTFPSCP  240
TKKKVERSLD GQITQIVYKG SHNHAKPQST RRSASQQQSL QTSSYGISDQ SASTISNPKI  300
EAVTLQEDSN SASMGGEDEF EQNSPISNSN GADDDNEPEA KRWKGENANE TYAAPGSRIV  360
KEPRIVVQTT SEIDILDDGY RWRKYGQKVV KGNPNPRSYY KCTSTGCPVR KHVERASHDT  420
RAVITTYEGK HNHDVPAARG SGGYGTRPAS DANSNSNVSV AAVRPLALPN HSNNLSYLSS  480
LQKQPTSESQ APYTLKMLQN TGSYGY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-113	WRKY family protein