PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0460351

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 373aa MW: 42195 Da PI: 6.2627

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0460351	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	80.1	2.4e-25	130	190	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK++ ++ +prsY+rC+++ gC+++k+v++ ++dp+++ +tY g+H+++ RcHm_v2.0_Chr3g0460351 130 DDGHTWRKYGQKQILNASHPRSYFRCSHKydqGCKATKQVQKVEDDPSLFRTTYFGNHTCK 190 8*************************99999************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MESLECTWPA SWNLQEKMKE ELVRGHELAN QLHLVVRNGD GETAKGLAAK IVCSFTNSLS 60 LLGGNHDSKG KHIQANTSSN TVALPTLVDS SSWVALEAIK RTEMLINSRS SSKKRKTSHS 120 WSRDAPDFID DGHTWRKYGQ KQILNASHPR SYFRCSHKYD QGCKATKQVQ KVEDDPSLFR 180 TTYFGNHTCK HSILKAPESI LDNVSGGSPR EESNSKFMIT FENNNNFPYE QEHPFFSSYS 240 STEREIIKSN HVASSRSSSL SCDYLVPPDQ VMVFESSEPI GRLPTMMELH SEDMITFENN 300 NNFPYEHEHP FLSSYSSTER EIIKSNHVAS SQSSSLSCDY LVPPDPVVVC ESSETISRLP 360 TMMELHSEDM IYY

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MESLECTWPA SWNLQEKMKE ELVRGHELAN QLHLVVRNGD GETAKGLAAK IVCSFTNSLS  60
LLGGNHDSKG KHIQANTSSN TVALPTLVDS SSWVALEAIK RTEMLINSRS SSKKRKTSHS  120
WSRDAPDFID DGHTWRKYGQ KQILNASHPR SYFRCSHKYD QGCKATKQVQ KVEDDPSLFR  180
TTYFGNHTCK HSILKAPESI LDNVSGGSPR EESNSKFMIT FENNNNFPYE QEHPFFSSYS  240
STEREIIKSN HVASSRSSSL SCDYLVPPDQ VMVFESSEPI GRLPTMMELH SEDMITFENN  300
NNFPYEHEHP FLSSYSSTER EIIKSNHVAS SQSSSLSCDY LVPPDPVVVC ESSETISRLP  360
TMMELHSEDM IYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	1e-29	WRKY family protein