PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0459291
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 791aa    MW: 86279.7 Da    PI: 6.3023
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0459291genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4163.4e-1274197782374
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                              +lLl+cAeavs++++e+a+++L ++sel++p g++ qR+aayf eA++arl++s+ + y++lp+s+++ ++s++ ++a+++f+ +s
  RcHm_v2.0_Chr3g0459291 419 LTLLLQCAEAVSADNFEEATKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGFYASLPVSAAPITHSQKLVSAFQVFNGIS 505
                             579************************************************************************************ PP

                    GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                             P++kfsh+taNqaI ea+e+e+rvHi+D+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s ++le+tg+rL++fA++lg+p
  RcHm_v2.0_Chr3g0459291 506 PFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMDALEATGKRLTDFADKLGLP 588
                             *************************************************************....********************** PP

                    GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                             fef + va+++ +l++++L+++++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++
  RcHm_v2.0_Chr3g0459291 589 FEFFP-VAEKVGSLDPDRLNISKREAVAVHWLQ--HSLYDVTGSDAN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIH 667
                             *****.7*************************9..999999999999....**********************.899********** PP

                    GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                             yysalfdsl+a++++eseer++vE++ll+rei+nv+a  g +r  + + +++Wre+++++GF+ ++l  +aa+qa lll +++sdgy
  RcHm_v2.0_Chr3g0459291 668 YYSALFDSLSASYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGEVK-FHNWREKFQQSGFRGISLAGNAATQATLLLGMFPSDGY 753
                             ******************************************888776.************************************** PP

                    GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374
                             ++ e++g+l lgWkd  L+++SaWr
  RcHm_v2.0_Chr3g0459291 754 TLVEDNGTLKLGWKDLCLLTASAWR 778
                             ************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    
MAACALLGDN GDLVSGNGSN NNNNNNNNSP LNSNSQGSSV VEQQNPVRSK MVRKRMASEI  60
EVQPTNNTNP IRIGSSNNNG DNYMRVSRNR SVMLNPNPTH DKVNMVSNYS TTMLNLPVPS  120
SSNNLTTLMT SGGGGVLSTA SASSSPPSWG PIDPLSLHHP IHHTQIAATT PPPAVCGFSG  180
LPLFPPERTS PPNHTSTTLS TVMDQDSSAT AWIDGIIKDL IHSSTNVSIP QLIQNVREII  240
FPCNPNLASL LEYRLRSISE PPPPPIPLFN RRRDQGPGLQ LNLDSNSSGI NDVTVFPSST  300
TSGHHVMNQE LFLNWGDTLS QQQQQQPNPT SSPTCNESNI QVQQHHISQV VHPQQQTLDK  360
QQQQQQNSPS PAAESTQTTT APAPPSTTAP ATPSPAVLMR EKKEEMRQQK RDEEGLHLLT  420
LLLQCAEAVS ADNFEEATKM LLEISELSTP FGTSAQRVAA YFSEAMSARL VSSCLGFYAS  480
LPVSAAPITH SQKLVSAFQV FNGISPFVKF SHFTANQAIQ EAFEREDRVH IVDLDIMQGL  540
QWPGLFHILA SRPGGPPYVR LTGLGTSMDA LEATGKRLTD FADKLGLPFE FFPVAEKVGS  600
LDPDRLNISK REAVAVHWLQ HSLYDVTGSD ANTLWLLQRL APKVVTVVEQ DLSHAGSFLG  660
RFVEAIHYYS ALFDSLSASY GEESEERHVV EQQLLSREIR NVLAVGGPSR SGEVKFHNWR  720
EKFQQSGFRG ISLAGNAATQ ATLLLGMFPS DGYTLVEDNG TLKLGWKDLC LLTASAWRPP  780
YLATTNPNLH Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein