PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0458611
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 295aa    MW: 33786.9 Da    PI: 9.8568
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0458611genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.18.5e-171150342
                            --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                  SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                            i n+s r+ t+ kR++g++KK +EL +LCd++++ ii+s+
  RcHm_v2.0_Chr3g0458611 11 ITNDSARKATYKKRKKGLMKKVSELTTLCDIDACAIIYSP 50
                            89*************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MTRKKVKLTY ITNDSARKAT YKKRKKGLMK KVSELTTLCD IDACAIIYSP YDSQPEIWPS  60
PLGVQRVLAQ FKTMPEMEQS KKMVNQETFL RQRINKAQEQ LKKQKKDNRE KEMARVMFQS  120
LTGKSLRGLT LSDLTDLGWV IDQHLQELHL RMKNIKEEAV KSQNQVQGAQ GVSAAATEHR  180
MAVMKSNGEG SSSNMAMKTG EESSNMQHAA LDRQVFDHMH NMEAMQLQMM QMASQKQQNP  240
WFMDMMNAPP PTPLPHPDHH QHMGFTGEDM MVPFADHNHN TMWPNPLPAS AFNFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLTYITNDSARKATYKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-60M-type_MADS family protein