PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr3g0458031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | C3H | ||||||||
Protein Properties | Length: 150aa MW: 16797.7 Da PI: 7.7857 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.9 | 4.1e-09 | 57 | 79 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f +tG+C+yGd Ck+ H++ RcHm_v2.0_Chr3g0458031 57 VCNRFIKTGFCQYGDACKYFHPK 79 7********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence |
MPLGKYDCEY CDKQFQDTPY GRRRHLQSLQ HLRAKAQWYD SFKDPNDAYA QSLGRGVCNR 60 FIKTGFCQYG DACKYFHPKN NQQNTMTQGA SGVTDNSQSS TFQGNQTAAG CSLPDVVVRD 120 NMGMSWGNLP PSLMPPPEGG YPPLPFVDWG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 4e-24 | C3H family protein |