PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0454311
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YC
Protein Properties Length: 266aa    MW: 29572.4 Da    PI: 6.3403
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0454311genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1788.8e-56811841101
                   NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 
                             ql+sfw++q   iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+t
  RcHm_v2.0_Chr3g0454311  81 QLQSFWANQfqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAIT 167
                             89******99999************************************************************************** PP

                   NF-YC  85 rtdifdflvdivprdel 101
                             rtdifdflvdivpr++l
  RcHm_v2.0_Chr3g0454311 168 RTDIFDFLVDIVPREDL 184
                             **************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MDQQGHGQPQ SMGMVGSGAQ LAYGTAPYQH TQMVGSPNPA TVGAPVGGIQ SSSQSAGAQL  60
QQHQLAYQHI HQQQQQQLQQ QLQSFWANQF QEIEKVTDFK NHSLPLARIK KIMKADEDVR  120
MISAEAPVIF ARACEMFILE LTLRSWNHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP  180
REDLKDEVLA SIPRGTVSVG AADALPPYCY MPPQHGSQVG APGMIMGKPM MDPSMYGQQS  240
HPYMAPQMWP QAPEQQQQQQ QSPSDH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.36e-83NF-YC family protein