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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | RcHm_v2.0_Chr3g0452201 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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| Family | GeBP | ||||||||
| Protein Properties | Length: 330aa MW: 38576.6 Da PI: 7.3212 | ||||||||
| Description | GeBP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF573 | 76.8 | 3.6e-24 | 132 | 226 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk..aksgkepsfskehdqk 87
+r+ws+eDe+ lL+ ++d++++ ++++ fy+ v+ + + ++sk+ l eKi rLKkK ++ v+k ++g+e++f+++hd+
RcHm_v2.0_Chr3g0452201 132 RKRIWSKEDELELLKNFLDYRTRPR--TANETTSFYDEVNPKFKDQFSKRKLAEKIARLKKKHRNVVNKmgNNNGQEFRFRNPHDRA 216
68******************77766..6689**************************************88899************* PP
DUF573 88 ifelskkiWg 97
if++s++iW
RcHm_v2.0_Chr3g0452201 217 IFDISHRIWA 226
*********6 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 330 aa Download sequence |
MQFSQTQTKP YSKGEYQSLV WSGSFQLTRK MPWPLLKWIM YTSSSSSSSS EDFSDAEDEG 60 TSKKGNDHRR DPNKQGEQNH DDDSNEDDFS YKPQEDETSN SSDYTFTINE PRRKRRRIDN 120 KEDSTIVSFK RRKRIWSKED ELELLKNFLD YRTRPRTANE TTSFYDEVNP KFKDQFSKRK 180 LAEKIARLKK KHRNVVNKMG NNNGQEFRFR NPHDRAIFDI SHRIWAESPL YNVQEKNVVV 240 DSHDVGSSKA SFDEKHNNGD DEGNTDVREM IIGLAMNPIP LSLSNYGGRG GEVVDEKWKE 300 QQILELEAYS KRLELVQHQV KAALDDLRSK |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 112 | 134 | RRKRRRIDNKEDSTIVSFKRRKR |
| 2 | 113 | 117 | RKRRR |
| 3 | 113 | 135 | RRKRRRIDNKEDSTIVSFKRRKR |
| 4 | 114 | 118 | KRRRI |
| 5 | 114 | 136 | RRKRRRIDNKEDSTIVSFKRRKR |
| 6 | 115 | 137 | RRKRRRIDNKEDSTIVSFKRRKR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G28040.1 | 1e-22 | GeBP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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