PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0452191

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

GeBP

Protein Properties

Length: 425aa MW: 45790.5 Da PI: 4.4966

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0452191	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	119.4	1.9e-37	128	226	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehd 85 lfqrlw++eDei lLqG++d+++++g s ++d+ fy+++k++++++++k+qlveK+rrLKkK+++ +k++sgke+sf+++hd RcHm_v2.0_Chr3g0452191 128 LFQRLWTDEDEIELLQGFLDYTTQRGNkggSHQNDTALFYDQIKSKLQLEFNKNQLVEKLRRLKKKYRNVLNKIASGKEVSFKSPHD 214 79*********************998845555************************************************* PP DUF573 86 qkifelskkiWg 97 q +fe+s+kiW RcHm_v2.0_Chr3g0452191 215 QATFEISRKIWS 226 *********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MAPDQDDAVL PEGDLSSSSQ DDEEEDVDVD EDEDDDVDDD DDVINSASPS STSNSLPVAI 60 ATAAPTVTVA LPAPHATTAP ATTTTTAVLS EGLDPKRPRT IQYDPVLLPL AAPEEKKPAA 120 ALDDSRRLFQ RLWTDEDEIE LLQGFLDYTT QRGNKGGSHQ NDTALFYDQI KSKLQLEFNK 180 NQLVEKLRRL KKKYRNVLNK IASGKEVSFK SPHDQATFEI SRKIWSNIGR IGVAGADDND 240 DEDPNPNPNN PNFNHFEIKT EEAAGFQKST PKSRKRQRTP AQPKTPSFVE PAAVPVIKEN 300 HHNVNNGGGV GGGGGGGSNC GNCNVQGMIE ETVKSCLSPV LRELMSSSMG GGGPSRGFGG 360 LSLNPIPLSF GGPSMSLNFG GGEAADEQWR KQQILELEVY SKRLELVQNQ IKVALDELRS 420 TGGGG

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MAPDQDDAVL PEGDLSSSSQ DDEEEDVDVD EDEDDDVDDD DDVINSASPS STSNSLPVAI  60
ATAAPTVTVA LPAPHATTAP ATTTTTAVLS EGLDPKRPRT IQYDPVLLPL AAPEEKKPAA  120
ALDDSRRLFQ RLWTDEDEIE LLQGFLDYTT QRGNKGGSHQ NDTALFYDQI KSKLQLEFNK  180
NQLVEKLRRL KKKYRNVLNK IASGKEVSFK SPHDQATFEI SRKIWSNIGR IGVAGADDND  240
DEDPNPNPNN PNFNHFEIKT EEAAGFQKST PKSRKRQRTP AQPKTPSFVE PAAVPVIKEN  300
HHNVNNGGGV GGGGGGGSNC GNCNVQGMIE ETVKSCLSPV LRELMSSSMG GGGPSRGFGG  360
LSLNPIPLSF GGPSMSLNFG GGEAADEQWR KQQILELEVY SKRLELVQNQ IKVALDELRS  420
TGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	2e-76	GeBP family protein