PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr3g0452171 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 180aa MW: 20810.8 Da PI: 5.9256 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 41.6 | 1.5e-13 | 9 | 55 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+i +k +vt+skRr+g++ KA E + ++a++a+i fs+ k RcHm_v2.0_Chr3g0452171 9 KKITDKNSLKVTYSKRRKGLFRKADEFCSKTGAQIAIITFSPGMKPM 55 678999999********************************976655 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence |
MGLKKIEIKK ITDKNSLKVT YSKRRKGLFR KADEFCSKTG AQIAIITFSP GMKPMTFGNP 60 SVESVINRYE LCEQSSNDKE ILDEDRDLHE VAMSDEEKEI IEGMELNELK QHVSSVEEQR 120 NKLAWQIKDR KRRESSTIDL FGMNASVDLN LFGMKVGEMM EIEETKRRES CTKDFLSNFN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 134 | DRKRRE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 5e-22 | M-type_MADS family protein |