PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr3g0452161 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 164aa MW: 18947.7 Da PI: 5.42 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.7 | 4e-15 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i+nk + tf kRr+g++ KA EL++ ++a++avi fs+ +k +++ RcHm_v2.0_Chr3g0452161 9 KKISNKNALKATFLKRRQGLFHKADELCTKTGAQIAVIAFSPGDKPFTF 57 689***************************************9998887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence |
MGIKKNEMKK ISNKNALKAT FLKRRQGLFH KADELCTKTG AQIAVIAFSP GDKPFTFGHP 60 SADSVIDQYY YPGKQVLEEN SSLGSVVIDE QDEKVKFWLD KPIEGMGLDE LKEFERWVED 120 ELDETKMRRS CTKDLLGLNW IEDPKLDEMK IRESRTKDFL ANWV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-23 | M-type_MADS family protein |