PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0451801

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 602aa MW: 68542.4 Da PI: 6.1583

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0451801	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.6	2.1e-15	122	180	2	65
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 W+++e laL+++r+ me+++ + We+vs+k++e gf+rs+++Ckek+e+ ++++ +i+ RcHm_v2.0_Chr3g0451801 122 WSNDELLALLRIRSTMENWFPEF-----TWEHVSRKLAEVGFKRSAEKCKEKFEEESRYFNNIN 180 ******************998.....9*****************************9887 PP
2	trihelix	94.6	9.1e-30	460	551	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 rW+++evlaLi++r ++ ++ ++ k+plWe++s+ m+e g++r++k+Ckekwen+nk+++k+k+ +kkr s +s+tcp RcHm_v2.0_Chr3g0451801 460 RWPRDEVLALINLRCSLFNNGDQQDkdkdggaVKAPLWERISQGMSELGYKRNAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCP 545 8************888887764223344449****************************************8.9999 PP trihelix 81 yfdqle 86 yf+ql RcHm_v2.0_Chr3g0451801 546 YFHQLS 551 **95 PP

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence
MFDGVPAEQL HQFIAASRTS LPLPLPNIPL SSFPNLQPFD HHHHHHHSYN IINPPPPTPQ 60 ELVQLQPPPH NQLLLPSVVL HRRANDQEKQ ENSTTLVLPS SNLEIERERT ASMPPELPSD 120 PWSNDELLAL LRIRSTMENW FPEFTWEHVS RKLAEVGFKR SAEKCKEKFE EESRYFNNIN 180 FNKNFRFLSE LEQLYQPPVE PPQNVAEDQP EKNTEKVVEV EKPSEELGNQ DKGQTALDPQ 240 ESPSNDQTVS ETQVEIVRAK SNNKKRKRQR RFEMLKGFCE DIVNKLMAQQ EETHSQLLED 300 MVRRDEEKLA KEEAWKKQEM DRMNKELETM AHEQAVAGDR QATIIQFLKK FTSSASTSSS 360 TNPSNGQKEN DQEPITSSTM VPSASNVHKS TTTTSFHTQN NPSTPTSLTE AIAPQSPSSS 420 TLSINPKLPI SSPPPENPSS DHLKTQNPSS DDKAQDLGKR WPRDEVLALI NLRCSLFNNG 480 DQQDKDKDGG AVKAPLWERI SQGMSELGYK RNAKRCKEKW ENINKYFRKT KDVNKKRSLD 540 SRTCPYFHQL STLYNQGILV PPSDHQAAAP ENRSPENQSS LAEGEKNNMV LQAVPAAFDF 600 EF

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence

MFDGVPAEQL HQFIAASRTS LPLPLPNIPL SSFPNLQPFD HHHHHHHSYN IINPPPPTPQ  60
ELVQLQPPPH NQLLLPSVVL HRRANDQEKQ ENSTTLVLPS SNLEIERERT ASMPPELPSD  120
PWSNDELLAL LRIRSTMENW FPEFTWEHVS RKLAEVGFKR SAEKCKEKFE EESRYFNNIN  180
FNKNFRFLSE LEQLYQPPVE PPQNVAEDQP EKNTEKVVEV EKPSEELGNQ DKGQTALDPQ  240
ESPSNDQTVS ETQVEIVRAK SNNKKRKRQR RFEMLKGFCE DIVNKLMAQQ EETHSQLLED  300
MVRRDEEKLA KEEAWKKQEM DRMNKELETM AHEQAVAGDR QATIIQFLKK FTSSASTSSS  360
TNPSNGQKEN DQEPITSSTM VPSASNVHKS TTTTSFHTQN NPSTPTSLTE AIAPQSPSSS  420
TLSINPKLPI SSPPPENPSS DHLKTQNPSS DDKAQDLGKR WPRDEVLALI NLRCSLFNNG  480
DQQDKDKDGG AVKAPLWERI SQGMSELGYK RNAKRCKEKW ENINKYFRKT KDVNKKRSLD  540
SRTCPYFHQL STLYNQGILV PPSDHQAAAP ENRSPENQSS LAEGEKNNMV LQAVPAAFDF  600
EF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	265	270	KRKRQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	4e-64	Trihelix family protein