PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0450591

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 314aa MW: 34928.9 Da PI: 10.6159

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0450591	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.3	2.4e-31	252	309	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeH+h+ RcHm_v2.0_Chr3g0450591 252 DEYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCVEDPSMLIVTYEGEHKHS 309 9**********************9988**************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence
MEKVESANKA AVESCHTVLN SLLCKPKNDI QSKSLGVQTE EAVVKFKRVV SLLSHGRRIR 60 KLKKKLDSSL PQSLFLDGPN YRSDISSKTL QLLPATFPQN LHTQNQKVFL GNPVLDMSNK 120 LPLQIAKPKP LQQLHRLQVH PQQFTGINLA FNKPTTTPSL SNAASFISCL SMDAGGVANY 180 GSNSFRLING SVPQSSDQIS QQQRRSSGAE QSSSVKCGSN DKCPNSRKRR LRVRRSFKVP 240 AVSQNVANIP GDEYSWRKYG QKPIKGSPYP RGYYKCSSMR GCPARKHVER CVEDPSMLIV 300 TYEGEHKHSQ SAHQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	63	RRIRKLK
2	230	239	RLRVRRSFKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	3e-85	WRKY family protein