PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0447531

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

AP2

Protein Properties

Length: 832aa MW: 91007.8 Da PI: 6.5839

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0447531	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	44.3	4.3e-14	318	377	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g RcHm_v2.0_Chr3g0447531 318 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEDKAARAYDLAALKYWG 377 57*****************666664478446******99***********98 PP
2	AP2	46.4	9.9e-15	420	471	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g RcHm_v2.0_Chr3g0447531 420 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 471 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 832 aa Download sequence
MNMNWLGFSL SPQEDDHAPI SHQLADQETL ASRLGFNSNE IQGAGGGTDV SGGGSSECFD 60 VTNSDSTASV NHHLTPSIFG IHEAAAFNRN NDHIHSQDWN MKGAGMNSSD SNNYKRTSSS 120 DLSTMLMGSN TSTTSTSYSI ISQQANLENH HQQLPKLENF LGRHSFADHD SSSAGHDYMF 180 DMNNGPGPVS SIVMNTKTNS NNIGLSMIKT WLRNQPSQPR DNHHQLEQES KNSKESRNQP 240 QSSLSLSMGT GSLQTVTTAT AGGAATGETT SSSDKNTKQS PVVTATTTTG TDAQTQSTGG 300 AIEAVPRKAI DTFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQTRKG RQVYLGGYDK 360 EDKAARAYDL AALKYWGTTT TTNFPISSYE KEIDEMKPMT RQEYVASLRR KSSGFSRGAS 420 IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDM 480 SRYDVKSILE SSALPITTGA TAKRLKDVQQ QQPPPPADHH HQIMLSSVLD HHGQVIRSSS 540 STEHDIMSNV YSAYGSYGAQ QGCSWPTLAF NQAQAQAAAA PHQAPFAAGI NGMQLHYSPY 600 GYGYGNAHAQ RVWCKQEQDT NSNQERSFHH QDDDHLRQQL QLGGTHNFFH DHDQQQQQQQ 660 QQTSGLMGLM DSSAASMEHS SGSNSVIYSG GDHHGNNNGY GSSTTGTGGG YIMPMVMSTV 720 VANDDQNQAD GNNNNINGFG DGDDQEANIK AQQLGYDHHP QNMFLGSSST IDPAYQHHAS 780 NRNLYYHLPV QDDQHESSSV AVATSSTTCN MNWVPTAVPT LAHPTFTVWN DT

Sequence ? help Back to Top

Protein Sequence Length: 832 aa Download sequence

MNMNWLGFSL SPQEDDHAPI SHQLADQETL ASRLGFNSNE IQGAGGGTDV SGGGSSECFD  60
VTNSDSTASV NHHLTPSIFG IHEAAAFNRN NDHIHSQDWN MKGAGMNSSD SNNYKRTSSS  120
DLSTMLMGSN TSTTSTSYSI ISQQANLENH HQQLPKLENF LGRHSFADHD SSSAGHDYMF  180
DMNNGPGPVS SIVMNTKTNS NNIGLSMIKT WLRNQPSQPR DNHHQLEQES KNSKESRNQP  240
QSSLSLSMGT GSLQTVTTAT AGGAATGETT SSSDKNTKQS PVVTATTTTG TDAQTQSTGG  300
AIEAVPRKAI DTFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQTRKG RQVYLGGYDK  360
EDKAARAYDL AALKYWGTTT TTNFPISSYE KEIDEMKPMT RQEYVASLRR KSSGFSRGAS  420
IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDM  480
SRYDVKSILE SSALPITTGA TAKRLKDVQQ QQPPPPADHH HQIMLSSVLD HHGQVIRSSS  540
STEHDIMSNV YSAYGSYGAQ QGCSWPTLAF NQAQAQAAAA PHQAPFAAGI NGMQLHYSPY  600
GYGYGNAHAQ RVWCKQEQDT NSNQERSFHH QDDDHLRQQL QLGGTHNFFH DHDQQQQQQQ  660
QQTSGLMGLM DSSAASMEHS SGSNSVIYSG GDHHGNNNGY GSSTTGTGGG YIMPMVMSTV  720
VANDDQNQAD GNNNNINGFG DGDDQEANIK AQQLGYDHHP QNMFLGSSST IDPAYQHHAS  780
NRNLYYHLPV QDDQHESSSV AVATSSTTCN MNWVPTAVPT LAHPTFTVWN DT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17430.1	1e-123	AP2 family protein