PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0176181 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NAC | ||||||||
Protein Properties | Length: 238aa MW: 27100.4 Da PI: 9.6899 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 80.2 | 4.3e-25 | 10 | 174 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev..diykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknra....... 77 lp+G+rF+Ptdeelvv+yL++kv+g +l++ ++i++ + y +P++Lp+ ++ ++ yfF +++ + + ++k++nr+ RcHm_v2.0_Chr2g0176181 10 LPVGYRFDPTDEELVVHYLRRKVHGLPLPA-SIIPDYnnNYYFDHPSHLPMPPGETMQKRYFFYNSEYNDEkSKKNNNRSnykraaa 95 799***************************.7899885334555*****96444444566666665544441344445544556665 PP NAM 78 .tksgyWkatgkdkevlsk....kgel..........vglkktLvfy...............kgrapkgektdWvmheyrl 128 + g W++ gk+k+++++ + + g++ktLvf ++ + +++ +W+mhey+l RcHm_v2.0_Chr2g0176181 96 aAGCGSWRSIGKEKQIVATthsdH--QsscsqaqlavLGVRKTLVFCgshrkketnhhyhyqHQYGSLSSSPRWFMHEYNL 174 566899***********9866541..15566677787*********97666555444443321222233477899999986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence |
MNGGGGVQML PVGYRFDPTD EELVVHYLRR KVHGLPLPAS IIPDYNNNYY FDHPSHLPMP 60 PGETMQKRYF FYNSEYNDEK SKKNNNRSNY KRAAAAAGCG SWRSIGKEKQ IVATTHSDHQ 120 SSCSQAQLAV LGVRKTLVFC GSHRKKETNH HYHYQHQYGS LSSSPRWFMH EYNLLGSEVL 180 GNSWILCSVF QKRRKPASKK RGRTSTLDIT GSGYLPKPSN SCSSEITTHD QEVFSKCY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.2 | 6e-24 | NAC family protein |