PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0175971

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 335aa MW: 35745.4 Da PI: 9.5514

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0175971	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.6	5.3e-35	80	165	2	87
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLl qa+p+i ++tgt++++as+ a+ s+s+++ s RcHm_v2.0_Chr2g0175971 80 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLHQAEPSILAATGTGTIPASALaAAGGSVSQQG-TSL 165 789******************************************************************98854444444433.222 PP

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence
MDPKASKQPQ EIPSFLSLPQ PQQQQHHHQQ HHHQQQPNTM SENNNNSSNH NNNNNVVKPA 60 EIKDFQIAIA DKDETKKQLA PKRSSNKDRH TKVEGRGRRI RMPALCAARI FQLTRELGHK 120 SDGETIQWLL HQAEPSILAA TGTGTIPASA LAAAGGSVSQ QGTSLSAGLH QKIDELGGGG 180 SSGGRTSWAM VGGNLGRPHV AAATGLWPPA GFGFSSQSSS SGPSTTNLGG TESSSNYLQK 240 IGFPGGFDLP VTNMGPMSFT SILGGGSQQL PGLELGLSQD GHLGVLNSQA ALNQIYQQMG 300 HARVHHQQQH PQQHQHQHQH QQAPSSKDDS QGSGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	5e-66	TCP family protein