PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0175901

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SBP

Protein Properties

Length: 398aa MW: 44284.8 Da PI: 8.6178

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0175901	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.4	2.7e-40	98	175	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C v+gC+adls ++eyhrrh+vCe hsk+p v+++g+++rfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+++ RcHm_v2.0_Chr2g0175901 98 TCLVDGCKADLSGCREYHRRHRVCELHSKTPIVVIRGQQKRFCQQCSRFHSLVEFDEVKRSCRKRLNGHNQRRRKPKP 175 5**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MEWDFKDFAW DSNDDDQLDQ QKEENDLAAL VGSSSTSSRG GELSSFSLVD LKLGSTSAEV 60 VAPIAIKPSV LVSSSPLSTT RRVDHHQKLK VSSSSKSTCL VDGCKADLSG CREYHRRHRV 120 CELHSKTPIV VIRGQQKRFC QQCSRFHSLV EFDEVKRSCR KRLNGHNQRR RKPKPESFYF 180 TSKSFLSNYK GPRILHFGTP QLCATTNARS LWPFEAKSTA VHQPVLYNRH QRLHAVEHQQ 240 IPPNSFTNNG GADKQFIFLQ TNDPKIATFK QAATPQAFMQ EPCPTLTAAA ALPHSTRAAA 300 GPAVSFDGTT RGIDSSCALY LLSSSNPTQS MVNNSLSHLV QSNVVINTDS GHQQLQMKSF 360 SEFPSYCSNN HVEDKYFLRP DPDGLLDTGA QMLPILLE

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MEWDFKDFAW DSNDDDQLDQ QKEENDLAAL VGSSSTSSRG GELSSFSLVD LKLGSTSAEV  60
VAPIAIKPSV LVSSSPLSTT RRVDHHQKLK VSSSSKSTCL VDGCKADLSG CREYHRRHRV  120
CELHSKTPIV VIRGQQKRFC QQCSRFHSLV EFDEVKRSCR KRLNGHNQRR RKPKPESFYF  180
TSKSFLSNYK GPRILHFGTP QLCATTNARS LWPFEAKSTA VHQPVLYNRH QRLHAVEHQQ  240
IPPNSFTNNG GADKQFIFLQ TNDPKIATFK QAATPQAFMQ EPCPTLTAAA ALPHSTRAAA  300
GPAVSFDGTT RGIDSSCALY LLSSSNPTQS MVNNSLSHLV QSNVVINTDS GHQQLQMKSF  360
SEFPSYCSNN HVEDKYFLRP DPDGLLDTGA QMLPILLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	8e-42	SBP family protein