PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0175531
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 324aa    MW: 37807 Da    PI: 8.6904
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0175531genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.42.9e-163173244
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                             i+n+  r+vtf kR++g++KK +EL  LCd++ +vii+ +++
  RcHm_v2.0_Chr2g0175531 31 LIKNEKSRNVTFRKRKKGLMKKTYELNKLCDVQCSVIIYENKN 73
                            59************************************97654 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MLVLVRSLMQ YLLCMFSQIM GRSNTKLPLE LIKNEKSRNV TFRKRKKGLM KKTYELNKLC  60
DVQCSVIIYE NKNGQLVRPD TYPENPEEVK QIIDRFVSKS AKVRKVENLA DFFSKQIMQV  120
KKETAKLRQK NNEARFPSWD DRLDDFSLDQ LLALLKKLEH KIEDVHKHYD KQYAIDDSIL  180
QQTALFPNNN VDYSQMVALN QYPTSGSMMY TSDRALPEEQ TNLQGLFQNN LINYHQNYNY  240
CSITMNNRNG MPWQNYNIQS APSASNGSNY DEQSTSMKCE NRLQYGNIDE NLTLCNHVPP  300
QQTVYPMSAS YLFDNANQFL HLKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14347RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.18e-13M-type_MADS family protein