PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0174361

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 392aa MW: 44263.6 Da PI: 5.94

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0174361	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	79.6	4.6e-25	65	147	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e+++Li +rre++ ++++k++k+lWe++s kmr++gf rsp++C++kw+nl k++kk +++ k + +s ++ y+++l+ RcHm_v2.0_Chr2g0174361 65 WIQEETRCLISFRREVDGLFNTSKSNKHLWEQISGKMRDKGFDRSPTMCTDKWRNLLKEFKKARQQVKVG--SRSAKMLYYEDLQ 147 *******************************************************************998..4555799999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MYLSEKPHPI DFYKSVDASS SPDRDMIMEV VSAAAANAAA APGGNTSSGG EDHEVRAPKK 60 RAEHWIQEET RCLISFRREV DGLFNTSKSN KHLWEQISGK MRDKGFDRSP TMCTDKWRNL 120 LKEFKKARQQ VKVGSRSAKM LYYEDLQELI RDRTSHNNST NAANNAAAAA YKRPNSPPKL 180 ESFIRFSDKS LEDAGIPFGP MEADRTAVDL ERQLDHDGDP LAITAAEAVA ANEVPPWNWR 240 EGPENGGETH SSFCGRIITV KLGEYNTRRI GIDGTADAIK EAIKSAFRIR TKRAFWLEDE 300 YQVVRSLDRD MPLGNYTLHL DEGITIKLCL CDESDRIVRT EEITFYTEDD FRDFLSRRGL 360 IGLRELGGYR RIDTLDDLQS GAMYQGVRLL GD

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MYLSEKPHPI DFYKSVDASS SPDRDMIMEV VSAAAANAAA APGGNTSSGG EDHEVRAPKK  60
RAEHWIQEET RCLISFRREV DGLFNTSKSN KHLWEQISGK MRDKGFDRSP TMCTDKWRNL  120
LKEFKKARQQ VKVGSRSAKM LYYEDLQELI RDRTSHNNST NAANNAAAAA YKRPNSPPKL  180
ESFIRFSDKS LEDAGIPFGP MEADRTAVDL ERQLDHDGDP LAITAAEAVA ANEVPPWNWR  240
EGPENGGETH SSFCGRIITV KLGEYNTRRI GIDGTADAIK EAIKSAFRIR TKRAFWLEDE  300
YQVVRSLDRD MPLGNYTLHL DEGITIKLCL CDESDRIVRT EEITFYTEDD FRDFLSRRGL  360
IGLRELGGYR RIDTLDDLQS GAMYQGVRLL GD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-134	Trihelix family protein