PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0171091

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HD-ZIP

Protein Properties

Length: 310aa MW: 35181.8 Da PI: 4.9904

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0171091	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.5	1.5e-20	66	119	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ +++++LAkklgL+ rqV vWFqNrRa++k RcHm_v2.0_Chr2g0171091 66 KKRRLTAEQVHLLEKSFETDNKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWK 119 56789************************************************9 PP
2	HD-ZIP_I/II	134.7	3.3e-43	65	156	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 ekkrrl++eqv+lLE+sFe+++kLep+rK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l ++ +++ ke+++L RcHm_v2.0_Chr2g0171091 65 EKKRRLTAEQVHLLEKSFETDNKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLANYDSILKENQKL 151 69************************************************************************************* PP HD-ZIP_I/II 88 reelk 92 ++e+ RcHm_v2.0_Chr2g0171091 152 KSEVV 156 *9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MEPGRLFFEP QQGGGGNMLF LGSGDHVFRG PRSIIGMEET SRRRSFFSTQ DELYEEEYYD 60 EQMPEKKRRL TAEQVHLLEK SFETDNKLEP DRKTQLAKKL GLQPRQVAVW FQNRRARWKT 120 KQLERDYDVL KASYDSLLAN YDSILKENQK LKSEVVAITE KLEAKDQEEK GAAFAGDHHH 180 HDEKRLPGHL LPGEKEMITD VNVPMSLQFD VKVEDRLSSG SGASAVVDEE GPQHVDSGDS 240 YFPSSSDVHN YPPPHPPHDH HHCMGLVGGV HSEDDGSDDG RSYFSDVFAA AAAEQQQPEE 300 GVSMGWWVWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	122	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	3e-86	HD-ZIP family protein