PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0169011

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 490aa MW: 53123.2 Da PI: 7.9294

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0169011	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.2	4.5e-30	206	265	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a Cpv+k+v+r+ +d +++++tYeg+Hnh+ RcHm_v2.0_Chr2g0169011 206 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApACPVRKQVQRCVDDMSILITTYEGTHNHP 265 58*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MPNSNSTAAA EETKVESFGC QEGHSEEENY ELVNAKAEMN EVRKENARLK KTLEHMMKDY 60 QSLQSRFFDI LKQESHSKKA TMSASTSHIK IEEAHDQLLS LCLGRSPRDP KNISDESRLV 120 QVDHHQDLKA NLTLELGSKL QLPTELVLSG PIPENSSEEP KEAEASPSST KTPRTIGSED 180 DEASQQANAA KRARVSVRAR CDTPTMNDGC QWRKYGQKIA KGNPCPRAYY RCTVAPACPV 240 RKQVQRCVDD MSILITTYEG THNHPLPMTA TSIASTTSAA ASMLLSGSST SQLPGLGSSF 300 GLFDNSRQQQ LYLSKFSSSP LLPTVTLDLT SSPSPSSTQY RTFRPSVSFC SSESNINLPT 360 SWGNGYPKFG TPFDRKNQEC FQPNHQPSSQ VSLTETLTKA ITSDPNFKSV IAVALSSMVG 420 GGAASYGSQG VGERLGQHLT QNAKGSASSI FNSLSSSGSQ KGNLTLLQPP LPFPESKSTS 480 SSPAIRDKSL

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MPNSNSTAAA EETKVESFGC QEGHSEEENY ELVNAKAEMN EVRKENARLK KTLEHMMKDY  60
QSLQSRFFDI LKQESHSKKA TMSASTSHIK IEEAHDQLLS LCLGRSPRDP KNISDESRLV  120
QVDHHQDLKA NLTLELGSKL QLPTELVLSG PIPENSSEEP KEAEASPSST KTPRTIGSED  180
DEASQQANAA KRARVSVRAR CDTPTMNDGC QWRKYGQKIA KGNPCPRAYY RCTVAPACPV  240
RKQVQRCVDD MSILITTYEG THNHPLPMTA TSIASTTSAA ASMLLSGSST SQLPGLGSSF  300
GLFDNSRQQQ LYLSKFSSSP LLPTVTLDLT SSPSPSSTQY RTFRPSVSFC SSESNINLPT  360
SWGNGYPKFG TPFDRKNQEC FQPNHQPSSQ VSLTETLTKA ITSDPNFKSV IAVALSSMVG  420
GGAASYGSQG VGERLGQHLT QNAKGSASSI FNSLSSSGSQ KGNLTLLQPP LPFPESKSTS  480
SSPAIRDKSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	9e-54	WRKY family protein