PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0168851
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 319aa    MW: 35826.9 Da    PI: 6.9309
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0168851genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.4e-1893145456
                             -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             + +++ eq+++Le+ Fe+ +++  e++ +LAk lgL+ rqV +WFqNrRa++k
  RcHm_v2.0_Chr2g0168851  93 KKRLNLEQVKTLEKSFEMGNKLEPERKLQLAKALGLQPRQVAIWFQNRRARWK 145
                             4568889*********************************************9 PP
2HD-ZIP_I/II129.71.2e-4191181191
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             ekk+rl+ eqvk+LE+sFe+ +kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy++Lk+++dalk++n++L++++++L
  RcHm_v2.0_Chr2g0168851  91 EKKKRLNLEQVKTLEKSFEMGNKLEPERKLQLAKALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKKKFDALKADNDALQAHNKKL 177
                             69************************************************************************************* PP

             HD-ZIP_I/II  88 reel 91 
                             ++el
  RcHm_v2.0_Chr2g0168851 178 QAEL 181
                             *998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MAFPPCHSFM FQTHEDPDLH LSAASSSLNN LPSCPPQHFH GGGGVPFMMK RSLSFSGVDD  60
KCNHHHYDHQ DLHGGGDQDD LSDDGSQLIG EKKKRLNLEQ VKTLEKSFEM GNKLEPERKL  120
QLAKALGLQP RQVAIWFQNR RARWKTKQLE KDYDVLKKKF DALKADNDAL QAHNKKLQAE  180
LLAVKGIKDS NFEGGLNNHL KKEIDQGSWS NGSTDDNSSD HVNLDMSRST TPAANSPQSN  240
SQITNGSKNL FPSSLCRPPH ASITQLLQGS SRSDLHCLKV DQMIQDDQTF CTMFNNGSID  300
QDHQGSFWPW PAEQPHHFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140148RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.14e-73HD-ZIP family protein