PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0168471
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ZF-HD
Protein Properties Length: 353aa    MW: 38210.9 Da    PI: 7.501
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0168471genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer111.83.5e-3565122359
             ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                              v+YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre+e+
  RcHm_v2.0_Chr2g0168471  65 VVTYKECLKNHAASLGGHALDGCGEFMPSPTATpTDPTSLKCAACGCHRNFHRREPED 122
                             589******************************9*********************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MDIAPSITTT TTTTTSTKSP EADSDTPTRI QPAKPISFSN GVLKRHHPAH HHHHHNSSIP  60
VTPVVVTYKE CLKNHAASLG GHALDGCGEF MPSPTATPTD PTSLKCAACG CHRNFHRREP  120
EDNIPAVAPA THVIEYQPHH RHHPPPPLIG NRSPNSASPP PISSSYYPSA PHMLLALSTG  180
ISDNPNNHHG GQIVSPGGPN ARKRFRTKFS QEQKDKMFQF AERVGWKMQK RDEDIVHEFC  240
NEIGVDKGVL KVWMHNNKNT FAKRDGSGGA GNGINTTAAA RLPNSTLDQI HNNMNGNNNN  300
TSNEEDEDDD HPNNNNNNGG GSLSNIPNPI HHHYQLGGDH PHGVTNGGSS SSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-73ZF-HD family protein