PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0166991

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 534aa MW: 58158.9 Da PI: 9.1484

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0166991	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.7	4.4e-32	234	290	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dD ynWrKYGqK+vkgse+prsYY+Ct+ +Cpvkkkvers ++++ei+Y+g+Hnh+ RcHm_v2.0_Chr2g0166991 234 DDRYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERSP-TGEITEIIYKGQHNHD 290 8**************************************.9************7 PP
2	WRKY	105.5	2.8e-33	419	477	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a dpk+v++tYeg+Hnh+ RcHm_v2.0_Chr2g0166991 419 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYNGCNVRKHVERAAGDPKAVITTYEGKHNHD 477 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MAAKHQDSIS APQPQRPVIT LPPRPSAEAL FGGGSGASPG PMTLVSSFFS DSGCDSEFRS 60 FSQLLAGAMG SPLGQARPIV FGQNQNPVGK EGGGSENGGE KSSGFKQGRP MNLMVTHSPL 120 FTVPPGMSPS GLLNSPAGFF APPSPFGISH QQALAHVTAL AQSNMQMQAD YQSSLVAAPT 180 ESQTSNPPSN PNEASQQQTA PSTSELGSSM VQSSEASHPD KKYPSSHATD KPADDRYNWR 240 KYGQKQVKGS EYPRSYYKCT HLNCPVKKKV ERSPTGEITE IIYKGQHNHD PPQPNKRAKD 300 GGGQNGHMDS QPKLENGLQR RVGDSNRSSE AVPERDYEHA QTAPVQLPSD SEDLEKAFLK 360 PFLRIFIEYQ PPFSLLNIKI SIVSNCRNID GVASEVALPH KTVTEPKIIV QTRSEVDLLD 420 DGYRWRKYGQ KVVKGNPHPR SYYKCTYNGC NVRKHVERAA GDPKAVITTY EGKHNHDVPA 480 ARNSSHNIAN NNASQFKPPT VVAAEKHPLL KGREFGNNDQ RPVLLQLKEE QIAV

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MAAKHQDSIS APQPQRPVIT LPPRPSAEAL FGGGSGASPG PMTLVSSFFS DSGCDSEFRS  60
FSQLLAGAMG SPLGQARPIV FGQNQNPVGK EGGGSENGGE KSSGFKQGRP MNLMVTHSPL  120
FTVPPGMSPS GLLNSPAGFF APPSPFGISH QQALAHVTAL AQSNMQMQAD YQSSLVAAPT  180
ESQTSNPPSN PNEASQQQTA PSTSELGSSM VQSSEASHPD KKYPSSHATD KPADDRYNWR  240
KYGQKQVKGS EYPRSYYKCT HLNCPVKKKV ERSPTGEITE IIYKGQHNHD PPQPNKRAKD  300
GGGQNGHMDS QPKLENGLQR RVGDSNRSSE AVPERDYEHA QTAPVQLPSD SEDLEKAFLK  360
PFLRIFIEYQ PPFSLLNIKI SIVSNCRNID GVASEVALPH KTVTEPKIIV QTRSEVDLLD  420
DGYRWRKYGQ KVVKGNPHPR SYYKCTYNGC NVRKHVERAA GDPKAVITTY EGKHNHDVPA  480
ARNSSHNIAN NNASQFKPPT VVAAEKHPLL KGREFGNNDQ RPVLLQLKEE QIAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13960.1	1e-119	WRKY family protein