PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0165641 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | TCP | ||||||||
Protein Properties | Length: 367aa MW: 40483.5 Da PI: 7.0077 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 97.4 | 2.6e-30 | 65 | 192 | 2 | 99 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................... 65 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak i++l+ + RcHm_v2.0_Chr2g0165641 65 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDAAKDDIDQLPPLpmmppapgsygggglmnhqslln 151 689*************************************************************88888888888877777777776 PP TCP 66 ......................ssssaseceaesssssasnsssgkaaksaakskk 99 + + +++++++++ ++ s + RcHm_v2.0_Chr2g0165641 152 iipssldqnigdqgfrsniwrsT-------------NDDEKDRENDKDVEE--SDE 192 55555554444443333332221.............111111111111111..111 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence |
MIRSPNTNEA DVQGPEGNSS THNEAGKTSR VALSSSISRS STSTTVAPWM RLSKDPRIVR 60 VSRAFGGKDR HSKVCTVRGL RDRRVRLSVP TAIQLYDLQD RLGLNQPSKV VDWLLDAAKD 120 DIDQLPPLPM MPPAPGSYGG GGLMNHQSLL NIIPSSLDQN IGDQGFRSNI WRSTNDDEKD 180 RENDKDVEES DEDDHRQQGG NVVDHGSSSS NNFLMTRSSA TTNHPLFFPG LLNNSNAMPN 240 YGFHNWDHNQ SSNFPLSHQL GSHGLTSQHT DPHNFNVASL PSTLSLSTGT TQAYFPSHAT 300 TDAADHQINI PRQFNLHMQN PHQNLLANSV YPSSQSMQRA TPQNLMSMIT KLAHSSQPNK 360 DQEPPSR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 6e-42 | TCP family protein |