PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0165641
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family TCP
Protein Properties Length: 367aa    MW: 40483.5 Da    PI: 7.0077
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0165641genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.42.6e-3065192299
                     TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................... 65 
                              g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak  i++l+ +                       
  RcHm_v2.0_Chr2g0165641  65 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDAAKDDIDQLPPLpmmppapgsygggglmnhqslln 151
                             689*************************************************************88888888888877777777776 PP

                     TCP  66 ......................ssssaseceaesssssasnsssgkaaksaakskk 99 
                                                   +             + +++++++++  ++  s +
  RcHm_v2.0_Chr2g0165641 152 iipssldqnigdqgfrsniwrsT-------------NDDEKDRENDKDVEE--SDE 192
                             55555554444443333332221.............111111111111111..111 PP

Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    
MIRSPNTNEA DVQGPEGNSS THNEAGKTSR VALSSSISRS STSTTVAPWM RLSKDPRIVR  60
VSRAFGGKDR HSKVCTVRGL RDRRVRLSVP TAIQLYDLQD RLGLNQPSKV VDWLLDAAKD  120
DIDQLPPLPM MPPAPGSYGG GGLMNHQSLL NIIPSSLDQN IGDQGFRSNI WRSTNDDEKD  180
RENDKDVEES DEDDHRQQGG NVVDHGSSSS NNFLMTRSSA TTNHPLFFPG LLNNSNAMPN  240
YGFHNWDHNQ SSNFPLSHQL GSHGLTSQHT DPHNFNVASL PSTLSLSTGT TQAYFPSHAT  300
TDAADHQINI PRQFNLHMQN PHQNLLANSV YPSSQSMQRA TPQNLMSMIT KLAHSSQPNK  360
DQEPPSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.16e-42TCP family protein