PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0164941 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 257aa MW: 29188.2 Da PI: 9.7486 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.6 | 9.2e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++ RcHm_v2.0_Chr2g0164941 9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 104 | 1.9e-34 | 80 | 175 | 6 | 100 |
K-box 6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 + +++ + +++ e+ kL ++ie Lqr++R++ GedL++Lsl+eLq+Leqq++++lk++R++Kn++++e+i+e+qkk + lqe+n RcHm_v2.0_Chr2g0164941 80 SMGvPASESQGNWSMEFPKLTARIEILQRKIRNYTGEDLDPLSLRELQSLEQQIDTALKRVRARKNQVMHESISEMQKKHRTLQEQN 166 444345666889*************************************************************************** PP K-box 92 kaLrkklee 100 ++L kkl+e RcHm_v2.0_Chr2g0164941 167 NSLAKKLKE 175 ******986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence |
MGRGKVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD AEVALIVFST KGKLFEYATD 60 SSMEGILERY EQYSYAERQS MGVPASESQG NWSMEFPKLT ARIEILQRKI RNYTGEDLDP 120 LSLRELQSLE QQIDTALKRV RARKNQVMHE SISEMQKKHR TLQEQNNSLA KKLKENEKLL 180 QEEPNNNQQP NPSTLVLMPP LQATSPPALL SSLTIGGAFQ GRGDAMDEDA EDHQGSAQTR 240 PASNTLMPPW MVRHLNK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 9e-79 | MIKC_MADS family protein |