PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0163221

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 360aa MW: 39859.4 Da PI: 9.2367

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0163221	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	134.5	9.3e-42	116	244	2	134
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaesssssas 83 a+kkdrhski T++g+RdRRvRls+++a++fFdLqd LGfdk+skt+eWLl ++ aik+l ++ +s+s+s++++ +++ + RcHm_v2.0_Chr2g0163221 116 AVKKDRHSKIFTSQGLRDRRVRLSINVAREFFDLQDLLGFDKASKTLEWLLSNSRNAIKDLEKSkcnnsTSISSSSTSDCDDVLDIN 202 78************************************************************54333111111112222222222 PP TCP 84 nsssgkaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 ++++ ++++ k+aa +a+ srakarararertrekm+ ++ RcHm_v2.0_Chr2g0163221 203 -------NEASDDKRRKMKEAA--AIMARASRAKARARARERTREKMCGTS 244 .......222223344444444..78888*****************875 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MYSSTNNNIS SSGTVFPFPP YNFPFSSSPS SHNSHRPLLP QENTTRGGIF GPHHDQFSLF 60 NNCLLSPGPE STMVNLGGAS SNAIVRSSGD YQQHYGYGNN ITHPYFVSKV RVPVVAVKKD 120 RHSKIFTSQG LRDRRVRLSI NVAREFFDLQ DLLGFDKASK TLEWLLSNSR NAIKDLEKSK 180 CNNSTSISSS STSDCDDVLD INNEASDDKR RKMKEAAAIM ARASRAKARA RARERTREKM 240 CGTSTRSHQI CSQLSLFNEL EPADMNKEPG STLLSNCQAE YHESVALKRK LKAPSVSNYH 300 DRSLQLNPKS TEPSSNCGSH INIQFPNAIS QNYWDISGSV FTCPSICAIT TNMNLNSTGS

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MYSSTNNNIS SSGTVFPFPP YNFPFSSSPS SHNSHRPLLP QENTTRGGIF GPHHDQFSLF  60
NNCLLSPGPE STMVNLGGAS SNAIVRSSGD YQQHYGYGNN ITHPYFVSKV RVPVVAVKKD  120
RHSKIFTSQG LRDRRVRLSI NVAREFFDLQ DLLGFDKASK TLEWLLSNSR NAIKDLEKSK  180
CNNSTSISSS STSDCDDVLD INNEASDDKR RKMKEAAAIM ARASRAKARA RARERTREKM  240
CGTSTRSHQI CSQLSLFNEL EPADMNKEPG STLLSNCQAE YHESVALKRK LKAPSVSNYH  300
DRSLQLNPKS TEPSSNCGSH INIQFPNAIS QNYWDISGSV FTCPSICAIT TNMNLNSTGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	5e-25	TCP family protein