PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0163201
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family RAV
Protein Properties Length: 303aa    MW: 35074.6 Da    PI: 8.0969
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0163201genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2409.7e-132169155
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            s+ykGV   + +grW A+I++      ++r++lg+f  +eeAaka++ a ++++g
  RcHm_v2.0_Chr2g0163201 21 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFKGEEEAAKAYDIASQRFRG 69
                            78****9888.8*********3.....5*********************999987 PP
2B3901.9e-28146233185
                             EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                             f+kvltpsdv++++r+v+pk+ ae+h   + +++++  l +ed  g++W+++++++ +s++yvltkGW +Fvk+++Lk gD++ F+ 
  RcHm_v2.0_Chr2g0163201 146 FEKVLTPSDVGRLNRFVIPKQQAEKHfplMDSEAKGALLNFEDDLGNVWRFRYCFWSSSRSYVLTKGWTRFVKEKKLKGGDVIRFHG 232
                             99***************************8888999*************************************************94 PP

                             - CS
                      B3  85 d 85 
                             +
  RcHm_v2.0_Chr2g0163201 233 S 233
                             4 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MDLMSSFNEN ASDSNSKLPS SRYKGVVPQP NGRWGAQIYE KHQRVWLGTF KGEEEAAKAY  60
DIASQRFRGL DAITNVKQSS WSATIDDHED EAFFLQSHSK AEIVDMLRKH SYTNELELFK  120
HKNRGKRIKY RNIDLMDIHI QKEWLFEKVL TPSDVGRLNR FVIPKQQAEK HFPLMDSEAK  180
GALLNFEDDL GNVWRFRYCF WSSSRSYVLT KGWTRFVKEK KLKGGDVIRF HGSIMGEDKK  240
LFIECGPRNI DDEVSGFRER TGTVDEPLMA PGRDHDGVIR LFGVNIVDSN ILENSTYNCS  300
QYM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.12e-95RAV family protein