PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0160531
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 447aa    MW: 49240.8 Da    PI: 4.7961
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0160531genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.76e-91494362373
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal....ppsetsekn..sseelaalk 82 
                             ++lLl+cA a++s+d +laq++++ l++ as+ gdp+qRl++ +++AL +r +r +++l +      +ps++++++   +++     
  RcHm_v2.0_Chr2g0160531  49 EKLLLHCASALESNDVTLAQQVMWVLNNVASSVGDPNQRLTSWILRALISRSSRICPSLNNNGgggpNPSTSTTSTiaAERR----- 130
                             689********************************************************99874322333333333332222..... PP

                    GRAS  83 l........fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg...skee 157
                             l        ++++ P+++f++ + N+aI +a++g++++Hi+Df+i++++QWp+L++aL +Rpegpp slR+T+ +    +    + +
  RcHm_v2.0_Chr2g0160531 131 LmtvtelagYVDLIPWHRFGYCASNSAIFQAIQGCSKIHILDFSITHCMQWPTLIDALGKRPEGPPdSLRVTVPSCRPLVpplLNVS 217
                             123345699*****************************************************99998*****98875555889999* PP

                    GRAS 158 leetgerLakfAeelgvpfefnvl.....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvv 239
                             +ee+g rL +f +  +v+fefnv+      +  l++l++ +L++k +Eal+Vn++  l +l d+++s++s+r+++L++++ l+P+++
  RcHm_v2.0_Chr2g0160531 218 IEEVGLRLGNFSRFRDVSFEFNVIensssFELLLSQLNPTSLNLKDDEALVVNCQNWLRYLSDDEGSTNSARNNFLNMIRCLNPRII 304
                             ***********************964443333456779************************************************* PP

                    GRAS 240 vvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326
                             vvv++++d++s+s+  r++ +++y +  fdsle+ lp++s++r+ +E   +g++i+ ++  eg +r+er e+  + ++rl++aGF +
  RcHm_v2.0_Chr2g0160531 305 VVVDEDSDLSSPSLSSRITTCFNYLWIPFDSLETFLPKDSNQRMEYESD-IGQKIETIIGFEGVQRIERLESGVTASQRLRNAGFLS 390
                             *************************************************.************************************* PP

                    GRAS 327 vplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                              p+ e+++ ++k+ll +++  g+ ++ e++ lvl+Wk+++ v+++aW
  RcHm_v2.0_Chr2g0160531 391 SPFCEETVGEVKTLLDEHA-SGWGMKREEDMLVLTWKGHNSVFATAW 436
                             *******************.889999999****************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    
MKTEVRVGSS TSIAALQNPS LLINSTTSQG SLTGALRGCL GSLDGACIEK LLLHCASALE  60
SNDVTLAQQV MWVLNNVASS VGDPNQRLTS WILRALISRS SRICPSLNNN GGGGPNPSTS  120
TTSTIAAERR LMTVTELAGY VDLIPWHRFG YCASNSAIFQ AIQGCSKIHI LDFSITHCMQ  180
WPTLIDALGK RPEGPPDSLR VTVPSCRPLV PPLLNVSIEE VGLRLGNFSR FRDVSFEFNV  240
IENSSSFELL LSQLNPTSLN LKDDEALVVN CQNWLRYLSD DEGSTNSARN NFLNMIRCLN  300
PRIIVVVDED SDLSSPSLSS RITTCFNYLW IPFDSLETFL PKDSNQRMEY ESDIGQKIET  360
IIGFEGVQRI ERLESGVTAS QRLRNAGFLS SPFCEETVGE VKTLLDEHAS GWGMKREEDM  420
LVLTWKGHNS VFATAWVPNQ NGLMLED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-116GRAS family protein