PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0160351

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

GeBP

Protein Properties

Length: 424aa MW: 46620.3 Da PI: 4.6339

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0160351	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	116.1	2.1e-36	179	272	4	97
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 rlw e+Dei++L+G+idfkak+g +ps+++ af+ef+k+s++++vsk+ql++K rrLKkK++++ +k ++g+ p+fsk+h+ k+f+ RcHm_v2.0_Chr2g0160351 179 GRLWGEDDEIAILKGMIDFKAKKGIDPSSNMGAFHEFLKRSLKADVSKNQLMDKARRLKKKYHTNAEKGENGEGPVFSKAHELKSFD 265 69*********************************************************************************** PP DUF573 91 lskkiWg 97 lskkiWg RcHm_v2.0_Chr2g0160351 266 LSKKIWG 272 ****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MAPKRLLQDP PAASSMEEDS DAETLDEEQE EEEEEEEQND AVQEKSDEEE EEEEEEEEDN 60 EEEENVNAKK PVVIPSSSVV PNPQSESASS EDDDAAAGSE TESDDINHSP SASDFTVKPI 120 VSKPVNDSSS AKPTKKPAPA PAKPAPGSKR PAESDPTPKD SRKKKKGANG GDDEDTKKGR 180 LWGEDDEIAI LKGMIDFKAK KGIDPSSNMG AFHEFLKRSL KADVSKNQLM DKARRLKKKY 240 HTNAEKGENG EGPVFSKAHE LKSFDLSKKI WGAEANGGDD SAKNSRKKPR KSAKANNNNN 300 NNSSTVLALP VSDAAAERSV EKKVKVEEMN VANGGVKAAE SDDFWSKYPS LSDSLQLANC 360 SSRWEGLERV MIQKMPSIGS SKAKELDDRW RKLQVLEMEL TVKKLDLMHE QAKLLLDGIK 420 SRKD

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MAPKRLLQDP PAASSMEEDS DAETLDEEQE EEEEEEEQND AVQEKSDEEE EEEEEEEEDN  60
EEEENVNAKK PVVIPSSSVV PNPQSESASS EDDDAAAGSE TESDDINHSP SASDFTVKPI  120
VSKPVNDSSS AKPTKKPAPA PAKPAPGSKR PAESDPTPKD SRKKKKGANG GDDEDTKKGR  180
LWGEDDEIAI LKGMIDFKAK KGIDPSSNMG AFHEFLKRSL KADVSKNQLM DKARRLKKKY  240
HTNAEKGENG EGPVFSKAHE LKSFDLSKKI WGAEANGGDD SAKNSRKKPR KSAKANNNNN  300
NNSSTVLALP VSDAAAERSV EKKVKVEEMN VANGGVKAAE SDDFWSKYPS LSDSLQLANC  360
SSRWEGLERV MIQKMPSIGS SKAKELDDRW RKLQVLEMEL TVKKLDLMHE QAKLLLDGIK  420
SRKD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	287	325	KKPRKSAKANNNNNNNSSTVLALPVSDAAAERSVEKKVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G11510.1	8e-26	GeBP family protein