PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0159731
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 773aa    MW: 84190.9 Da    PI: 5.531
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0159731genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2098153156
                             TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  RcHm_v2.0_Chr2g0159731  98 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 153
                             688999***********************************************999 PP
2START218.52.2e-682935151206
                             HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS
                   START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla. 77 
                             ela +a++el+++a+ +ep+W  s     + +n+de++++f+++ v     ++ ea+r+s+vv+m++ +lve+l+d++ qW++ +  
  RcHm_v2.0_Chr2g0159731 293 ELAVAAMEELIRMAQIGEPLWLNSIdgstTVLNEDEYIRTFPRGIVpkqsgFKCEASRESAVVIMNHNNLVEILMDVN-QWSTVFSg 378
                             57899********************999999*************99********************************.******** PP

                             ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEE CS
                   START  78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgili 154
                                +a+tl+v+s+g      galq+m+ae+q++splvp R+++fvRy++q+ +g+w++vdvS+d+++  +  s +  ++++pSg+li
  RcHm_v2.0_Chr2g0159731 379 ivsRAMTLDVLSTGvagnynGALQVMTAEFQVPSPLVPtRESYFVRYCKQHVDGTWAVVDVSLDNQRGYT--SALKSCQRRPSGCLI 463
                             ********************************************************************87..56777799******* PP

                             EEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                   START 155 epksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                             ++++ng+skvtw+ehv++++r +h+l+++lv+sg a+gak+wvatl+rqce+
  RcHm_v2.0_Chr2g0159731 464 QEMPNGYSKVTWIEHVEVDERGVHNLYKQLVNSGNAFGAKRWVATLDRQCER 515
                             **************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    
MPAGIMIPAR NMPSMMGSNG NLGGYGSSSG LTLGQPNMME GGGHFGNPLD MMATQNTSES  60
ELNARLGDDF DSATKSGSEN LEGGGSGDDG QDPRPNKKKR YHRHTQHQIQ EMEAFFKECP  120
HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKTQHERHE NTSLRNDNEK LRADNMRYRE  180
ALSNASCPNC GGPTAIGEMS FDEHHLRLEN ARLREEIDRI SAIAAKYVGK PVGNYPLISS  240
PVPPNRSPLD LGVGNMGTSP HHSFLLNSDM YAPGDIMRSI GAPSEADKPM IIELAVAAME  300
ELIRMAQIGE PLWLNSIDGS TTVLNEDEYI RTFPRGIVPK QSGFKCEASR ESAVVIMNHN  360
NLVEILMDVN QWSTVFSGIV SRAMTLDVLS TGVAGNYNGA LQVMTAEFQV PSPLVPTRES  420
YFVRYCKQHV DGTWAVVDVS LDNQRGYTSA LKSCQRRPSG CLIQEMPNGY SKVTWIEHVE  480
VDERGVHNLY KQLVNSGNAF GAKRWVATLD RQCERLASAL ATNIPTGDVG VITTQEGRKS  540
MLKLAERMVI SFCAGVSAST THTWTTLSGT GADDVRVMTR KSVDDPGRPP GIVLSAATSF  600
WLPVPPKRVF EFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL RVNSANSSQS  660
NMLILQESCT DSTASYVIYA PVDIVAMNVV LNGSDPDYVA LLPSGFAILP DGTSGSNNGE  720
GESGGSLLTV AFQILVDSVP TAKLSLGSVA TVNNLIACTV ERIKASLSLD NEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein