PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0158801

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 604aa MW: 65497 Da PI: 5.1489

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0158801	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97	1.3e-30	343	401	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ RcHm_v2.0_Chr2g0158801 343 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNHNHP 401 7*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence
MAKGGGLSID SDPIGYLSLH KPIVLNSFQD QYPNSSSTTH KQHLSGLSMD HHTHQARSPP 60 PPQTLQFSVN LNCTDDNDDR ENSPPQSDDN QRKVVDERDF FADNNNKAEE ASTEKMDFDD 120 GPSGMEFNVN TGLNLLITNT SSDQSVVDDS ISSSMEDKRA KSELAVLQAE LERMNAENQR 180 LREMLNQVTT NYSALQVHLL SLMQNQKAEN SVEVEEKKLN NGSGSQMVVP RQFMDLGLAA 240 NGDAEEPSHS SSDERSRERS GSGDNGKVGA GNVGDEGPAF DQEKKEFGRG ISGREESPDQ 300 QTQSWGPNKV PRLNSPKEVD QTEATMRKAR VSVRARSEAP MITDGCQWRK YGQKMAKGNP 360 CPRAYYRCTM AAGCPVRKQV QRCAEDRTIL ITTYEGNHNH PLPPAAMAMA STTSSAARML 420 LSGSMPSADG LMDSNFLTRT ILPCSSSMAT ISASAPFPTV TLDLTQSPNP LQFQRPPGQF 480 NIPFPNPSQN LTNGPVSLLP QIFGQALYNQ SKFSGLQMSQ DMDRNAHPQQ AQQGQQQNSL 540 ADTVTAATAA IASDPNFTAA LAAAITSIIG NAHPNNNGNN STTNNNTSNS SGNGNNSSKL 600 QQQD

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence

MAKGGGLSID SDPIGYLSLH KPIVLNSFQD QYPNSSSTTH KQHLSGLSMD HHTHQARSPP  60
PPQTLQFSVN LNCTDDNDDR ENSPPQSDDN QRKVVDERDF FADNNNKAEE ASTEKMDFDD  120
GPSGMEFNVN TGLNLLITNT SSDQSVVDDS ISSSMEDKRA KSELAVLQAE LERMNAENQR  180
LREMLNQVTT NYSALQVHLL SLMQNQKAEN SVEVEEKKLN NGSGSQMVVP RQFMDLGLAA  240
NGDAEEPSHS SSDERSRERS GSGDNGKVGA GNVGDEGPAF DQEKKEFGRG ISGREESPDQ  300
QTQSWGPNKV PRLNSPKEVD QTEATMRKAR VSVRARSEAP MITDGCQWRK YGQKMAKGNP  360
CPRAYYRCTM AAGCPVRKQV QRCAEDRTIL ITTYEGNHNH PLPPAAMAMA STTSSAARML  420
LSGSMPSADG LMDSNFLTRT ILPCSSSMAT ISASAPFPTV TLDLTQSPNP LQFQRPPGQF  480
NIPFPNPSQN LTNGPVSLLP QIFGQALYNQ SKFSGLQMSQ DMDRNAHPQQ AQQGQQQNSL  540
ADTVTAATAA IASDPNFTAA LAAAITSIIG NAHPNNNGNN STTNNNTSNS SGNGNNSSKL  600
QQQD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-123	WRKY family protein