PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0156771

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 476aa MW: 52133 Da PI: 7.3008

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0156771	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.1	2e-29	114	171	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK v+g+ + rsYYrCt+++Cpvk++vers+ ++++++++Y g+H+h+k RcHm_v2.0_Chr2g0156771 114 EDGYNWRKYGQKLVRGNIYVRSYYRCTHPKCPVKRQVERSH-NGQLIDTVYFGQHDHPK 171 8**************************************.*************85 PP
2	WRKY	103.2	1.5e-32	283	341	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK vkg+++prsYYrC+ +gCpvkk+ver+ +d kvv+ tYeg+H+h+ RcHm_v2.0_Chr2g0156771 283 VNDGYRWRKYGQKLVKGNPNPRSYYRCSNPGCPVKKHVERAFNDSKVVIATYEGQHDHD 341 58********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MVSLGKDVTD EVASDNVPKK ENIDTEIHVS PHQTPTNGVC PLKSDDKGSA PSKVPNKALQ 60 VPDGGITALQ SNQEGSVSSL TSEKALLTPE TGALVLQSGH EGSTSSRVRE RPLEDGYNWR 120 KYGQKLVRGN IYVRSYYRCT HPKCPVKRQV ERSHNGQLID TVYFGQHDHP KPQLSVPIAV 180 GFAVSVGEER AEQRLLTSGE DKPLEAHGDT PKQTEPVDPL QHSNVAENEA VQGVLSLSNR 240 TRDGDPDPKR QKKEKHNGNS IPVDKPTGEP RVVVQTMSEV DIVNDGYRWR KYGQKLVKGN 300 PNPRSYYRCS NPGCPVKKHV ERAFNDSKVV IATYEGQHDH DVPPLRTVTP NTAASNVLPA 360 AHNGDSGTKV EAHAVSRASV ACTSPEHEGK PIEQPDFESK TKSRRIDAAA SDMVVDSDLG 420 PERKINEELI GKARVHEEGD PHDTIVCRAN KLQNGKSESI PSEQEKRKPK AEPVQG

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MVSLGKDVTD EVASDNVPKK ENIDTEIHVS PHQTPTNGVC PLKSDDKGSA PSKVPNKALQ  60
VPDGGITALQ SNQEGSVSSL TSEKALLTPE TGALVLQSGH EGSTSSRVRE RPLEDGYNWR  120
KYGQKLVRGN IYVRSYYRCT HPKCPVKRQV ERSHNGQLID TVYFGQHDHP KPQLSVPIAV  180
GFAVSVGEER AEQRLLTSGE DKPLEAHGDT PKQTEPVDPL QHSNVAENEA VQGVLSLSNR  240
TRDGDPDPKR QKKEKHNGNS IPVDKPTGEP RVVVQTMSEV DIVNDGYRWR KYGQKLVKGN  300
PNPRSYYRCS NPGCPVKKHV ERAFNDSKVV IATYEGQHDH DVPPLRTVTP NTAASNVLPA  360
AHNGDSGTKV EAHAVSRASV ACTSPEHEGK PIEQPDFESK TKSRRIDAAA SDMVVDSDLG  420
PERKINEELI GKARVHEEGD PHDTIVCRAN KLQNGKSESI PSEQEKRKPK AEPVQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04880.2	4e-88	WRKY family protein