PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0156761
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 558aa    MW: 62598.8 Da    PI: 6.6485
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0156761genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.91.4e-1361765522374
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfs 85 
                              ++L+ cA+av+++dl +aq+++ +l+++++ +g+p++Rl ay++e+L ar a+s+s+++kal+++e ++ +   sse l+++++++
  RcHm_v2.0_Chr2g0156761 176 NQVLVFCAKAVADNDLLMAQWMMDELRQMVAVSGEPIERLGAYMLEGLVARRASSGSSICKALRCKEPARCKepaSSELLSYMHILY 262
                             689***************************************************************99987789899********** PP

                    GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                             ev+P++kf+++ aN aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg++++ s   +   l+ +g+rL+k+Ae
  RcHm_v2.0_Chr2g0156761 263 EVCPYFKFGYMSANGAIAEAMKDENRVHIIDFQIGQGSQWLTLIQAFAARPGGPPHIRITGIDDSMSAyaRGGGLSIVGKRLSKLAE 349
                             ****************************************************************888789999************** PP

                    GRAS 171 elgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              ++vpfef++ +a +  d++le+L vkp +Eala n++++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n++ F+ r
  RcHm_v2.0_Chr2g0156761 350 MFKVPFEFHA-TAISGCDVQLENLGVKPgEEALAMNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPR 435
                             **********.8999*************999******************************************************** PP

                    GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                             f+e+l+yy+a+f+s++++lpr+ +eri vE+++l+reivn++aceg er+erhe l+kWr+r+ +aGF+p+pls+ +++++++ll++
  RcHm_v2.0_Chr2g0156761 436 FVETLNYYTAMFESIDVTLPRNRKERIDVEQHCLAREIVNIIACEGVERVERHELLGKWRSRFAMAGFTPYPLSSLVNATIETLLKN 522
                             *************************************************************************************** PP

                    GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             +++  yr++e++g+l+lgWk+r Lv+ +aW+
  RcHm_v2.0_Chr2g0156761 523 YSD-KYRLQERDGALYLGWKNRDLVASCAWK 552
                             **5.5*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    
MQASKQHRSS GMSKRLHYQP MQEVEAYCLP PFRVLDHQPP YNESSQSTHS TAQSFRERYC  60
TLESSSANGS YNTLYNSPST VSFSPNGSPV SQHDQDSHYQ YHSPDHTYGS SISGSCITDD  120
ATDFKYKLKE LETAMLGDSN IFDNYCSSLQ NGASNTRPEV DSWGQIMDSI SKKDLNQVLV  180
FCAKAVADND LLMAQWMMDE LRQMVAVSGE PIERLGAYML EGLVARRASS GSSICKALRC  240
KEPARCKEPA SSELLSYMHI LYEVCPYFKF GYMSANGAIA EAMKDENRVH IIDFQIGQGS  300
QWLTLIQAFA ARPGGPPHIR ITGIDDSMSA YARGGGLSIV GKRLSKLAEM FKVPFEFHAT  360
AISGCDVQLE NLGVKPGEEA LAMNFAFMLH HMPDESVSTQ NHRDRLLRLV KSLSPKVVTL  420
VEQESNTNTA AFFPRFVETL NYYTAMFESI DVTLPRNRKE RIDVEQHCLA REIVNIIACE  480
GVERVERHEL LGKWRSRFAM AGFTPYPLSS LVNATIETLL KNYSDKYRLQ ERDGALYLGW  540
KNRDLVASCA WKCKPGTD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein